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BaseInfo

ncRNA ID	novel_gar_miR407
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:33252266-33252405 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588
Length	21
Mature sequence(if miRNA)	1 - UAGCCAAGGAUGACUUGCCUA - 21
Stem-loop(if miRNA)	--         A     U   UA  UC  -AAC       ------U    G  AAG    - UC       UC   UAGCCAAGG UGACU GCC  UA  CA    AAGGAUU       UGUG AG   GAAG G  AGUUUCA  U   ||||||||| ||||| |||  ||  ||    |||||||       |||| ||   |||| |  |||||||  C   AUCGGUUUC ACUGA CGG  AU  GU    UUCCUGA       GCAC UU   CUUC C  UCAGAGU  U CU         C     C   UG  UC  AAUC       UAUUAAU    G  -CA    A CC       UC
Stem-loop sequence	UAGCCAAGGAUGACUUGCCUAUAUCCAAACAAGGAUUUUGUGGAGAAGGAAGGUCAGUUUCAUCUCUCUUGAGACUCCCACUUCACUUGCACGUAAUUAUAGUCCUUCUAAUGCUUAGUGGCCAGUCACCUUUGGCUAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017755461.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   ||||||||||||||||||||| targets:1773   UAGGCAAGUCAUCCUUGGCUA   1793 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum ankyrin repeat and SAM domain-containing protein 6 (LOC108456791), mRNA	ankyrin repeat and SAM domain-containing protein 6(LOC108456791)	coding protein	psRNATarget
XM_017771947.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:845   UCGGCAACUCAUCCUUGGCUU   865 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108470590), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108470590)	coding protein	psRNATarget
XM_017790883.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1081   UCGGCAACUCAUCCUUGGCUU   1101 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-5-like (LOC108486690), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-5-like(LOC108486690)	coding protein	psRNATarget
XM_017790874.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1105   UCGGCAACUCAUCCUUGGCUU   1125 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-5-like (LOC108486690), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-5-like(LOC108486690)	coding protein	psRNATarget
XM_017771945.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1233   UCGGCAACUCAUCCUUGGCUU   1253 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108470590), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108470590)	coding protein	psRNATarget
XM_017771946.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:1367   UCGGCAACUCAUCCUUGGCUU   1387 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108470590), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108470590)	coding protein	psRNATarget
XM_017771944.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   |*|||||*||||||||||||* targets:2832   UCGGCAACUCAUCCUUGGCUU   2852 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108470590), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108470590)	coding protein	psRNATarget
XM_017761781.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1134   CCGGCAACUCAUCCUUGGCUU   1154 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108461829), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108461829)	coding protein	psRNATarget
XM_017761782.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1136   CCGGCAACUCAUCCUUGGCUU   1156 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108461829), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108461829)	coding protein	psRNATarget
XM_017761780.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   **|||||*||||||||||||* targets:1139   CCGGCAACUCAUCCUUGGCUU   1159 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108461829), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-7-like(LOC108461829)	coding protein	psRNATarget
XM_017747542.1	ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1   *|*||*||||||||||||||= targets:1007   CACGCUAGUCAUCCUUGGCUG   1027 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108450089 (LOC108450089), mRNA	uncharacterized LOC108450089(LOC108450089)	coding protein	psRNATarget