ncRNA ID | novel_gar_miR406 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr1:119569244-119569425 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029587 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAUCGGUCGAUUAAGUCGGUUAAU - 24 |
Stem-loop(if miRNA) |
--     GU -GA    GU GG            AUGUUUUAU         -AAC      UAAAAA     --  --A    A            A   AAUCG  C   UUAA  C  UUAAUUGUUGAU         ACUUGUUUU    CAAAAA      UAAAU  AA   UUUC GUUAAUUCGGUU A   |||||  |   ||||  |  ||||||||||||         |||||||||    ||||||      |||||  ||   |||| ||||||||||||   UUGGC  G   AAUU  G  AAUUGACAAUUG         UGGAUAAAA    GUUUUU      AUUUG  UU   AAAG CAAUUAAGCCAG C AA     UG GAA    UG -G            -------CU         AAAA      UAAUUG     AC  GAA    C            C |
Stem-loop sequence | AAUCGGUCGAUUAAGUCGGUUAAUUGUUGAUAUGUUUUAUACUUGUUUUAACCAAAAAUAAAAAUAAAUAAAUUUCAGUUAAUUCGGUUAACCGACCGAAUUAACCGAAAAAGUUCAGUUUAGUUAAUUUUUUGAAAAAAAAUAGGUUCGUUAACAGUUAAGGGUUUAAAAGGGUCGGUUAA |