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BaseInfo

ncRNA ID novel_gar_miR406
Species Gossypium arboreum
Class miRNA
Genome position Chr1:119569244-119569425 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - AAUCGGUCGAUUAAGUCGGUUAAU - 24
Stem-loop(if miRNA) --     GU -GA    GU GG            AUGUUUUAU         -AAC      UAAAAA     --  --A    A            A
  AAUCG  C   UUAA  C  UUAAUUGUUGAU         ACUUGUUUU    CAAAAA      UAAAU  AA   UUUC GUUAAUUCGGUU A
  |||||  |   ||||  |  ||||||||||||         |||||||||    ||||||      |||||  ||   |||| ||||||||||||
  UUGGC  G   AAUU  G  AAUUGACAAUUG         UGGAUAAAA    GUUUUU      AUUUG  UU   AAAG CAAUUAAGCCAG C
AA     UG GAA    UG -G            -------CU         AAAA      UAAUUG     AC  GAA    C            C
Stem-loop sequence AAUCGGUCGAUUAAGUCGGUUAAUUGUUGAUAUGUUUUAUACUUGUUUUAACCAAAAAUAAAAAUAAAUAAAUUUCAGUUAAUUCGGUUAACCGACCGAAUUAACCGAAAAAGUUCAGUUUAGUUAAUUUUUUGAAAAAAAAUAGGUUCGUUAACAGUUAAGGGUUUAAAAGGGUCGGUUAA