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BaseInfo

ncRNA ID	novel_gar_miR390
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:22233606-22233667 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	24
Mature sequence(if miRNA)	1 - UUCAGAAGUCUGCACUCUACUGUU - 24
Stem-loop(if miRNA)	-U     -  -    C  UC     -U   CU   UCAGA AG UCUG AC  UACUG  UAG  U   ||||| || |||| ||  |||||  |||  C   AGUCU UC GGAC UG  AUGAC  AUC  C AC     A  U    U  -C     UU   CU
Stem-loop sequence	UUCAGAAGUCUGCACUCUACUGUUAGCUUCCUCCUAUUCAGUACGUUCAGGUCUAUCUGACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017792421.1	ncRNA:24   UUGUCAUCUCACGUCUGAAGACUU   1   ||=||||||||||||||||||||| targets:40   AAUAGUAGAGUGCAGACUUCUGAA   63 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum uncharacterized LOC108488115 (LOC108488115), mRNA	uncharacterized LOC108488115(LOC108488115)	coding protein	psRNATarget
XM_017793256.1	ncRNA:24   UUGU------CAUCUCACGUCUGAAGACUU   1   ||=|------|||*|*|||||||||||||= targets:2113   AAUAUUCUACGUACAAUGCAGACUUCUGAG   2142 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum eIF-2-alpha kinase GCN2 (LOC108489014), transcript variant X3, mRNA	eIF-2-alpha kinase GCN2(LOC108489014)	coding protein	psRNATarget
XM_017793255.1	ncRNA:24   UUGU------CAUCUCACGUCUGAAGACUU   1   ||=|------|||*|*|||||||||||||= targets:2469   AAUAUUCUACGUACAAUGCAGACUUCUGAG   2498 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum eIF-2-alpha kinase GCN2 (LOC108489014), transcript variant X2, mRNA	eIF-2-alpha kinase GCN2(LOC108489014)	coding protein	psRNATarget
XM_017793253.1	ncRNA:24   UUGU------CAUCUCACGUCUGAAGACUU   1   ||=|------|||*|*|||||||||||||= targets:2469   AAUAUUCUACGUACAAUGCAGACUUCUGAG   2498 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum eIF-2-alpha kinase GCN2 (LOC108489014), transcript variant X1, mRNA	eIF-2-alpha kinase GCN2(LOC108489014)	coding protein	psRNATarget