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BaseInfo

ncRNA ID	novel_gar_miR389
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:21618486-21618659 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588;SRR1029586
Length	24
Mature sequence(if miRNA)	1 - AAGAGUCAGAUUGCAUUUUGCCCC - 24
Stem-loop(if miRNA)	--AA    C                 C      C        G A          A    C  -----------------UA   UA    A  AA     GAGU AGAUUGCAUUUUGCCCC UUUAUU AAAAAAUG G AAAUUAAUCC UGUA GU                   AAU  AAAG GC  G     |||| ||||||||||||||||| |||||| |||||||| | |||||||||| |||| ||                   |||  |||| ||     UUCA UCUAACGUAAAACGGGG AGAUGA UUUUUUAC C UUUAAUUAGG GCAU CA                   UUA  UUUC CG  C GAUC    A                 A      -        A A          G    U  UCUUCACCUAUCUUAAAAA   UC    C  GU
Stem-loop sequence	AAGAGUCAGAUUGCAUUUUGCCCCCUUUAUUCAAAAAAUGGGAAAAUUAAUCCAUGUACGUUAAAUUAAAAGAGCAAGCUGGCCCUUUCUAUUAAAAAUUCUAUCCACUUCUACUUACGGGGAUUAAUUUACACAUUUUUUAGUAGAAGGGGCAAAAUGCAAUCUAACUUCUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017777482.1	ncRNA:24   CCCCGUUUUACGUUAGACUGAGAA   1   ||*|||||||||||||||=||||| targets:138   GGAGCAAAAUGCAAUCUGGCUCUU   161 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108475513 (LOC108475513), mRNA	uncharacterized LOC108475513(LOC108475513)	coding protein	psRNATarget
XM_017788261.1	ncRNA:24   CCCCGUUUUACGUUAGACUGAGAA   1   ||||=|||||||||||||||||*| targets:495   GGGGUAAAAUGCAAUCUGACUCCU   518 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum probable polygalacturonase At1g80170 (LOC108484468), transcript variant X2, mRNA	probable polygalacturonase At1g80170(LOC108484468)	coding protein	psRNATarget
XM_017755316.1	ncRNA:24   CCCCGUUUUACGUUAGACUGAGAA   1   ||*|||||||||||*||||||||| targets:1419   GGAGCAAAAUGCAAGCUGACUCUU   1442 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum lon protease-like (LOC108456709), mRNA	lon protease-like(LOC108456709)	coding protein	psRNATarget
XM_017782061.1	ncRNA:24   CCCCGUUUUACGUUAGACUGAGAA   1   *||*=||||||||||*|||||||| targets:2292   AGGAUAAAAUGCAAUAUGACUCUU   2315 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X7, mRNA	F-box/kelch-repeat protein At3g06240-like(LOC108479450)	coding protein	psRNATarget
XM_017782054.1	ncRNA:24   CCCCGUUUUACGUUAGACUGAGAA   1   *||*=||||||||||*|||||||| targets:2292   AGGAUAAAAUGCAAUAUGACUCUU   2315 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X1, mRNA	F-box/kelch-repeat protein At3g06240-like(LOC108479450)	coding protein	psRNATarget
XM_017782060.1	ncRNA:24   CCCCGUUUUACGUUAGACUGAGAA   1   *||*=||||||||||*|||||||| targets:2292   AGGAUAAAAUGCAAUAUGACUCUU   2315 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X6, mRNA	F-box/kelch-repeat protein At3g06240-like(LOC108479450)	coding protein	psRNATarget
XM_017782059.1	ncRNA:24   CCCCGUUUUACGUUAGACUGAGAA   1   *||*=||||||||||*|||||||| targets:2292   AGGAUAAAAUGCAAUAUGACUCUU   2315 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X5, mRNA	F-box/kelch-repeat protein At3g06240-like(LOC108479450)	coding protein	psRNATarget
XM_017782058.1	ncRNA:24   CCCCGUUUUACGUUAGACUGAGAA   1   *||*=||||||||||*|||||||| targets:2292   AGGAUAAAAUGCAAUAUGACUCUU   2315 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X4, mRNA	F-box/kelch-repeat protein At3g06240-like(LOC108479450)	coding protein	psRNATarget
XM_017782064.1	ncRNA:24   CCCCGUUUUACGUUAGACUGAGAA   1   *||*=||||||||||*|||||||| targets:2271   AGGAUAAAAUGCAAUAUGACUCUU   2294 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum F-box/kelch-repeat protein At3g06240-like (LOC108479450), transcript variant X10, mRNA	F-box/kelch-repeat protein At3g06240-like(LOC108479450)	coding protein	psRNATarget
XM_017776773.1	ncRNA:24   CC-CCGUUUUACGUUAGACUGAGAA   1   ||-||||||||*||||||||||||* targets:921   GGUGGCAAAAUACAAUCUGACUCUC   945 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum zinc finger protein ZOP1 (LOC108474761), transcript variant X2, mRNA	zinc finger protein ZOP1(LOC108474761)	coding protein	psRNATarget