Search result

BaseInfo

ncRNA ID	novel_gar_miR384
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:22223671-22223782 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	24
Mature sequence(if miRNA)	1 - AAGGAUCGGUUUGCUCUUUGAUCU - 24
Stem-loop(if miRNA)	--              UA      U         GU           AGGG  UAAU   AUCAGAGAGCAAAC  GUCUUU CUGUUAAAA  UUUAUCCAUUU    AC    U   ||||||||||||||  |||||| |||||||||  |||||||||||    ||    U   UAGUUUCUCGUUUG  UAGGAA GACAAUUUU  AGGUAGGUAAA    UG    U UC              GC      -         UG           --AA  UAAU
Stem-loop sequence	AUCAGAGAGCAAACUAGUCUUUUCUGUUAAAAGUUUUAUCCAUUUAGGGACUAAUUUUUAAUGUAAAAAUGGAUGGAGUUUUUAACAGAAGGAUCGGUUUGCUCUUUGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017749606.1	ncRNA:24   UCUAGUUUCUCGUUUGGCUAGGAA   1   |*||||||*|*||||||||||||| targets:103   AAAUCAAAAACCAAACCGAUCCUU   126 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum proteasome subunit alpha type-7-like (LOC108451899), mRNA	proteasome subunit alpha type-7-like(LOC108451899)	coding protein	psRNATarget
XM_017776795.1	ncRNA:24   UCUAGUUUCUCGUUUGGCUAGGAA   1   |*||||||*|*||||||||||||| targets:90   AAAUCAAAAACCAAACCGAUCCUU   113 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum proteasome subunit alpha type-7-like (LOC108474779), mRNA	proteasome subunit alpha type-7-like(LOC108474779)	coding protein	psRNATarget
XM_017789991.1	ncRNA:24   UCUA-------GUUUCUCGUUUGGCUAGGAA   1   =|||-------||||||*|||||=||||||| targets:1398   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1428 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X6, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789990.1	ncRNA:24   UCUA-------GUUUCUCGUUUGGCUAGGAA   1   =|||-------||||||*|||||=||||||| targets:1401   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1431 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X5, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789989.1	ncRNA:24   UCUA-------GUUUCUCGUUUGGCUAGGAA   1   =|||-------||||||*|||||=||||||| targets:1490   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1520 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X3, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789988.1	ncRNA:24   UCUA-------GUUUCUCGUUUGGCUAGGAA   1   =|||-------||||||*|||||=||||||| targets:1586   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1616 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X2, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789992.1	ncRNA:24   UCUA-------GUUUCUCGUUUGGCUAGGAA   1   =|||-------||||||*|||||=||||||| targets:1879   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1909 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X7, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789987.1	ncRNA:24   UCUA-------GUUUCUCGUUUGGCUAGGAA   1   =|||-------||||||*|||||=||||||| targets:1878   GGAUUUUAUUCCAAAGACCAAACUGAUCCUU   1908 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X1, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget