ncRNA ID |
ath_circ_025929 |
Species |
Arabidopsis thaliana |
Class |
circRNA |
Genome position |
5:6761330-6763611[+/+] |
Reference genome |
TAIR10 |
Source |
PlantcircBase
|
Method |
SMALT and Segemehl/find_circ/NA |
Type |
exonic |
Splice junction sequence |
CATCCATGGTCAATGTGCTATAATAATGTTTGACGTCACAGCACGGCTCACATACAAGAATGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTGAATTCATCCTTTGGATTTCTTCACAAACTGCGGAAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTTAGGGATGGATACTA |
Tissues |
siliques and seeds/leaf/root, leaf, aerial, inflorescences, whole_plant |
Exon boundary |
Yes-Yes |
Splicing signals |
AG-GT |
circRNA sequence |
NA |
Genomic sequence |
CATCCATGGTCAATGTGCTATAATAATGTTTGACGTCACAGCACGGCTCACATACAAGAATGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTGAAAACATCCCGATTGTTCTGTGTGGGAACAAAGTTGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTTACATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGCAAAGAGCAACTACAACTTTGAGAAGCCTTTCTTGTACCTTGCTAGAAAACTGGCTGGAGACCAAAACCTTCACTTTGTGGAGACACCAGCGCTTGCTCCACCAGAGGTTCACATTGACATTGCTGATCAGCAGAAGAACGAGGCCGAGCTCTTACAGGCTGCAGCTCAACCCCTCCCCGATGACGATGATGATATCTTTGAGTAAATCATCCTTCTAGAATGTCTGCCGTGGGAAGCTCTTGCTTGTTCCTTTTGGTTTTCTCTATGTTGTTTTGGTGTTACATATAAATCAATCGGTCTTTCTTATAACAAAAATTAGGTATGTATTTTTGGATGGTTCTTCTGATGGTATCCAAAGCTAAGTTGTTTCTTCGCAAGAATATTAGTTGATTGGAAAACTTTATTCTACCTCCTATTACTTGCCAGTTCTTAGATTTCAGATGCCACTCTTTAGCTACCAGGTGATGTCATATAAACCTGGGTAAAATTAGCTGCAAGTAGATCTTGTTGGGAGACCTGACCTGCATTGACAATGGTTAAGTTCTTTGCCTTCCCCGATCTCTCTAGCTTTGCAGATTCTTCTGCAATCCTCTTCCTTTTCTTCTTTGAAACTTGATCTTCTTAATCAATCCGCACCAGAACTTGTAGAATAATAATCGGATAACTTTTTGTTTGGCAACCATTCTTGCATTGAAGAATGAAGTAACCCTTTCCCTCAAATCAACGACCGATTTCAATCCGTGATTCCAGACATTTTCTTCAACCGTGAGCTCTAAGACCAATTTCTGCAAGTTTGAGCTTAAGAATTTATCGATGTGTATATTAATTTCTGGAAATATTGTTGGTATTAATATGTTACCATTAAATTTGAAAGGCATCATTAGATGGATGTCATGTGAGTGAGTACTTGAAATTTTGAAACTATCCGTTACGGACAATAAATCCTTATTTAAATGATTTGTTAGTAAAAAACTATGCTACAAATAAAATCAAAACTTCACATACGATACAGGAAATAAATATATTATTTATTTTGTCAAAACTCAAAACCAGGACCTAAAGCTGAAAAAAAAAAGATCCAACGGTGCAGAAAGCTGCGTAGATATTGGAGAGCCAAAAGATGGAATCTAACGGTGGAAAAAATAGCGTCAAACCTAAGCCAAAACCTCCCAAAATTCTCCTTATTAAAACCCCATCTCTCTCCCTAGTCCCTCTCGCCGCATCGCTTCTTAAACCTCGACGACATCAACGTCTGACTTCGCTTCTCCTCTCACATGGTGAACATTCTCTTCTCTTTTCCCGATTTCTTCGTCTTGTAGTATTTAGATCTCACGAGATCGCTTAATTTCGTTGATGTTTCTTTTTTCGGATTTTACTGAATTTTGTTGTGATATCTTGTTCAGGCTCTACCTAACCAACAAACCGTAGATTATCCTAGCTTCAAGCTCGTCATCGTTGGTGATGGAGGCACAGGTACAGTATTCTTCGCCGTGTTTTTTGACCTATTGTTTTTTGTGATCTCTGAAATTTGATCGTCTTTTCACTGTCCCCATCTGAAAGCATTCTCGTTTAAGAGACGGATTTGAGATTTTGATGATGTGCTGATTAGATTTGTACGATTGGTTTTTGATAATATCAATGTTTGATTGGTTTTAAAGAGAACCTTACAGACTAGGCCTTCGTTGAGCAGATCTTTGGGATATCGATTCTTAGATGATCCGGAATGTTGTTTTCATTGGCTCAGTTTTAGTATGGTTCAATGTTTTTGATTAGTTCTTGCTAAACCTATGATTGCTCTTGGTGTTTTGTACAGGGAAAACGACCTTTGTGAAGAGACATCTTACTGGGGAGTTTGAGAAGAAGTATGAACGTAAGTATAGCAAAGATGCTTGTGAATGCACAATTTCTGTGAACATCATCTGATGTTGAGTCCTAATCTTGTTTGTTGCAGCTACTATTGGTGTGGAGGTTCATCCTTTGGATTTCTTCACAAACTGCGGAAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTTAGGGATGGATACTA |