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BaseInfo

ncRNA ID	novel_gar_miR372
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:59202297-59202447 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588;SRR1029586
Length	21
Mature sequence(if miRNA)	1 - AAGGACCAGUUUGUUCUUUGA - 21
Stem-loop(if miRNA)	--                  C      -   --UU       UU    CUAUUAAAAACC   ----- AUCUGAUCUGACGUA   AAAGAGCAAAUUGGUUUU UGUUAU AAA    UCAUCCA  UUUA            GAU     C               C   |||||||||||||||||| |||||| |||    |||||||  ||||            |||     |               C   UUUCUUGUUUGACCAGGA AUAAUA UUU    AGUAGGU  AGAU            UGC     U               A AG                  A      A   UCAU       UU    ----------AA   UUUAU GGUUUGUCAAUGUGA
Stem-loop sequence	AAAGAGCAAAUUGGUUUUCUGUUAUAAAUUUCAUCCAUUUUUACUAUUAAAAACCGAUCAUCUGAUCUGACGUACCAAGUGUAACUGUUUGGUUAUUUCGUAAUAGAUUUGGAUGAUACUUUUAAUAAUAAAGGACCAGUUUGUUCUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017754589.1	ncRNA:21   AGUUUCUUGUUUGACCAGGAA   1   |||||*||||||||||||||| targets:1487   UCAAAAAACAAACUGGUCCUU   1507 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum transcription factor PIF4-like (LOC108455997), mRNA	transcription factor PIF4-like(LOC108455997)	coding protein	psRNATarget
XM_017789991.1	ncRNA:21   AGUUUCUUGUUUGACCAGGAA   1   *||||||*|||||||*||||| targets:1408   CCAAAGACCAAACUGAUCCUU   1428 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X6, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789990.1	ncRNA:21   AGUUUCUUGUUUGACCAGGAA   1   *||||||*|||||||*||||| targets:1411   CCAAAGACCAAACUGAUCCUU   1431 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X5, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789989.1	ncRNA:21   AGUUUCUUGUUUGACCAGGAA   1   *||||||*|||||||*||||| targets:1500   CCAAAGACCAAACUGAUCCUU   1520 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X3, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789988.1	ncRNA:21   AGUUUCUUGUUUGACCAGGAA   1   *||||||*|||||||*||||| targets:1596   CCAAAGACCAAACUGAUCCUU   1616 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X2, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789992.1	ncRNA:21   AGUUUCUUGUUUGACCAGGAA   1   *||||||*|||||||*||||| targets:1889   CCAAAGACCAAACUGAUCCUU   1909 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X7, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget
XM_017789987.1	ncRNA:21   AGUUUCUUGUUUGACCAGGAA   1   *||||||*|||||||*||||| targets:1888   CCAAAGACCAAACUGAUCCUU   1908 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108486142 (LOC108486142), transcript variant X1, mRNA	uncharacterized LOC108486142(LOC108486142)	coding protein	psRNATarget