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BaseInfo

ncRNA ID novel_gar_miR353
Species Gossypium arboreum
Class miRNA
Genome position Chr9:48307021-48307084 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587;SRR1029588;SRR1029586
Length 25
Mature sequence(if miRNA) 1 - ACUAUGCCUUUGAGGGGGUUGUGGG - 25
Stem-loop(if miRNA) --AC       --- UG         -------   G
    UAUGCCU   U  AGGGGGUUG       UGG U
    |||||||   |  |||||||||       |||
    AUACGGA   A  UUCCUUAAU       ACC G
GCAC       UGU GU         AGAAGUA   C
Stem-loop sequence ACUAUGCCUUUGAGGGGGUUGUGGGUGCCCAAUGAAGAUAAUUCCUUUGAUGUAGGCAUACACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017757967.1
ncRNA:25   GGGUGUUGGGGGAGUUUCCGUAUCA   1
  =|||-=|||==||||||||||||||
targets:695   UCCA-GACCUUCUCAAAGGCAUAGU   718

2.0 PREDICTED: Gossypium arboreum probable beta-D-xylosidase 5 (LOC108458549), mRNA probable beta-D-xylosidase 5(LOC108458549) coding protein psRNATarget