Search result

BaseInfo

ncRNA ID novel_gar_miR345
Species Gossypium arboreum
Class miRNA
Genome position Chr11:82574740-82574920 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - GUAUCUGGGUUACCAGUGUCGGCA - 24
Stem-loop(if miRNA) --  A  U            -  UG    GAGA    UCUGA         ---AA    -    AUAUG   ACAAGUGAAAGCGGAACAUCAAGU
  CC AU UUGGUGGCCCGG UA  AAAU    CAUU     AUUUGUUUC     GGUG UCUG     UCA                        G
  || || |||||||||||| ||  ||||    ||||     |||||||||     |||| ||||     |||
  GG UG GACCAUUGGGUC AU  UUUA    GUAA     UGAGCAAGG     GGUA GUCC     AGU                        C
AC  C  U            U  GU    ---G    --CAG         GUAAA    A    ---AU   ACUAACCGACUUCAUUAGGGCUAC
Stem-loop sequence CCAAUUUUGGUGGCCCGGUAUGAAAUGAGACAUUUCUGAAUUUGUUUCAAGGUGUCUGAUAUGUCAACAAGUGAAAGCGGAACAUCAAGUGCCAUCGGGAUUACUUCAGCCAAUCAUGAUACCUGAAUGGAAAUGGGAACGAGUGACAAUGGAUUUUGUAUCUGGGUUACCAGUGUCGGCA