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BaseInfo

ncRNA ID	novel_gar_miR343
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:83273872-83273983 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029586
Length	24
Mature sequence(if miRNA)	1 - UUCUGGAAACAAGUUUCUGACACC - 24
Stem-loop(if miRNA)	-UC  U        --AG  UG   A     ---CC        ---UUU     -  UU    GU CGGAAAUU    UU  GAA GCUGA     UAUUUGAG      CGAGC CC  G    || ||||||||    ||  ||| |||||     ||||||||      ||||| ||  G    CA GUCUUUGA    AG  CUU UGACU     AUGAACUU      GUUCG GG  A CCA  -        ACAA  GU   G     CUGUC        UUAGUU     C  CU
Stem-loop sequence	UCGUUCGGAAAUUAGUUUGGAAAGCUGACCUAUUUGAGUUUCGAGCCCUUGGAUCGGCGCUUGUUGAUUUUCAAGUACUGUCUCAGUGUUCUGGAAACAAGUUUCUGACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017777703.1	ncRNA:24   CCACAGUCUUUGAACAAAGGUCUU   1   *|***|||=||||||||||=|||| targets:554   AGCUACAGGAACUUGUUUCUAGAA   577 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108475719 (LOC108475719), mRNA	uncharacterized LOC108475719(LOC108475719)	coding protein	psRNATarget
XM_017791171.1	ncRNA:24   CCACAGUCUUUGAACAAAGGUCUU   1   ****|||||||*|||||||||||= targets:582   ACAUUCAGAAAAUUGUUUCCAGAG   605 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ubiquitin-conjugating enzyme E2 34-like (LOC108486987), transcript variant X5, mRNA	ubiquitin-conjugating enzyme E2 34-like(LOC108486987)	coding protein	psRNATarget
XM_017791169.1	ncRNA:24   CCACAGUCUUUGAACAAAGGUCUU   1   ****|||||||*|||||||||||= targets:590   ACAUUCAGAAAAUUGUUUCCAGAG   613 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ubiquitin-conjugating enzyme E2 34-like (LOC108486987), transcript variant X3, mRNA	ubiquitin-conjugating enzyme E2 34-like(LOC108486987)	coding protein	psRNATarget
XM_017791170.1	ncRNA:24   CCACAGUCUUUGAACAAAGGUCUU   1   ****|||||||*|||||||||||= targets:633   ACAUUCAGAAAAUUGUUUCCAGAG   656 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ubiquitin-conjugating enzyme E2 34-like (LOC108486987), transcript variant X4, mRNA	ubiquitin-conjugating enzyme E2 34-like(LOC108486987)	coding protein	psRNATarget
XM_017791168.1	ncRNA:24   CCACAGUCUUUGAACAAAGGUCUU   1   ****|||||||*|||||||||||= targets:638   ACAUUCAGAAAAUUGUUUCCAGAG   661 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ubiquitin-conjugating enzyme E2 34-like (LOC108486987), transcript variant X2, mRNA	ubiquitin-conjugating enzyme E2 34-like(LOC108486987)	coding protein	psRNATarget
XM_017791167.1	ncRNA:24   CCACAGUCUUUGAACAAAGGUCUU   1   ****|||||||*|||||||||||= targets:664   ACAUUCAGAAAAUUGUUUCCAGAG   687 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ubiquitin-conjugating enzyme E2 34-like (LOC108486987), transcript variant X1, mRNA	ubiquitin-conjugating enzyme E2 34-like(LOC108486987)	coding protein	psRNATarget
XM_017779787.1	ncRNA:24   CCACAGUCUUUGAACAAAGGUCUU   1   *****|||||=||||*|||||||| targets:988   UUCAGCAGAAGCUUGCUUCCAGAA   1011 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum putative protein NRT1/ PTR FAMILY 2.14 (LOC108477281), mRNA	putative protein NRT1/ PTR FAMILY 2.14(LOC108477281)	coding protein	psRNATarget