Search result

BaseInfo

ncRNA ID	ath_circ_025493
Species	Arabidopsis thaliana
Class	circRNA
Genome position	5:5582460-5585361[-/-]
Reference genome	TAIR10
Source	PlantcircBase
Method	SMALT and Segemehl/NA
Type	exonic
Splice junction sequence	CTTTTGAGGGCAGCACTAAGGTCAGATTCTTCCTTGTAGTTAAATGCATCATCAAACCCAAACTTGGTCTTCAGGAGATCAACCTAACAGATCCCCCAAACACAGCGATACGTCCGTGTGGGTTCATGTTTAATAGCACTGCGTCTAGCATTTTGCCTCCTACGTTTTCAAAGTATATGTCAATGCCTGTAGGGAAACAC
Tissues	siliques and seeds/root
Exon boundary	Yes-Yes
Splicing signals	AC-CT
circRNA sequence	NA
Genomic sequence	CTTTTGAGGGCAGCACTAAGGTCAGATTCTTCCTTGTAGTTAAATGCATCATCAAACCCAAACTTGGTCTTCAGGAGATCAACCTAACAGATCCCCCAAAAAGAAGTAAAAGGGCTAATTAATCTTTCTCTTGAAGGAGAACCAAGAAACATAAGGAATCAAAATATGGAAATGATGGTCAAATTCTCACCTTTTCTTTACTTCCAGCGCTTCCAACAACATAACAGCCCATCATCTTAGCAAATTGTCCCACAAGCTGACCAACCGCACCAGATGCAGCTGACACATAAACTGTCTCTCCTTTCTTTGGAGAACAAACTTCATAAAACCCAGCATAGGCAGTCATACCAGGCATACCTGTCAAGAACAGAGAAAACCAATCAGGAGAGAATATATTGAACATATCAACAAACCAAACGTTCGAAACTCTAGTCTTCTACATTGAAGTTTAAAACTCGACATAACTAATTCCATTTCCCACACACCGGTTTCATCATTCAAAACTATTATACATGGTTATGACATTCAACTTCATGATCTCTGTCTAAAATTACCAAGTGATTCCACATTTTCCACTTACAAAACAAGGAGCAAGGCATAGATTAACATACCGAGAAGTCCAGTATAGTAGGATAATGGAACATCTGTATGTTGGATCTTGAAATGCATGTGAGCCATTGGTGTAATAACACTATACTCCTCCCATCCAACTATTCCCCAGAGTAAATCACCTTTCTTGTAATCTGGATGCCCAGATTCTATCACTCTAGACACTCCATACCCATAGATTGGCTGCACCAAAAACACACAATGCAACAACAACAGTCAACACGAGAGAAAGCAAAAAACACAAAGAGACAAAATTTATTGTCAGAGTCTTCTTCAAGAACCCCAATCTGAAGTTTTTATACCATTGTCATCTAGTTTATATAAATAAGAAGCATCCTGATTAATTTAAGTACAGAAATAATCCAACATTAAACTAGAACAGTTGATCCGTTTGTTATATAATAAGACATCATTCTGGTCACAAAGTATAATTTATTATATCTCAACATATAAAACCAAACCAAACAAAACAAAACAAAACAAAACATTTTCATCCGATTTGAATTTCACCGGAGATCTTCCTAATCGGAGATTAAAAGTAGATCCTCGTCGTTCATACCTTGCCGGGAGCGTAAGCTTGAGCAAGAGCAGAGGAGGGATCAGGTTTCCCCATGCGAGACCGCATATAAGGATCGCATGACAGGTAGAGATTCTTCACAAGAACCGATTTAGAACCTTCCGGAACCCTAAGTTCGACGGTGGTGGTGGTGAAATTGAAATCGGATTCCTTAGGGAAACCACTCACGTGGTCTTTGAATATGACCTGCTTGTTCGTCGTCATCGTTGTTATTCTCCGATTCAACTTCTGATTTCCACCAATTTGTTACTTCTTCTTCTTCTTCTTCGAGGACGCGCCTGCTTTTTATAGTGGCCTCTCACTCGTAATATCAAGTATGAAGTCACTGCTCATGATGATTCATCACAATATGTTCACAATTTTTAAACTCTTTCGAGCGTTTTTATTGTTGACACTTTCACATTTTGTGATATATTTTCATTTCCTTTCACATTTCATTTTCTTTCCAATTCTCTCTTCTGTCACATTTTCACAAGAGTTGGTGTTTATACATTACTGATATAGGAAAAGGATGGTGATAAATGAGTGACACGTGGACGGTGGTAATTGAAGATTAAAAGCAACGGTCAATATTAAGAACAGAAGAATGAGGTCAATAAGAAGCTGAAGACACTTCATTATGCTAAAATCTGAGATTGTATCTTCTTCTTCATTTTGTTCTCTGTTACTACTTGAGAATTCTCTGTAATTCTCAAGCTATTCCTCATCGTTTACCGGAGCTTCTCTCTTGAGACTCTTGTAGATGAGAAGTTGATGTTGCGTTTCATGAACGTCGTATCAAATTATCAATCTATATCTTTCGAATCCATTTTCCTCTTTATTATCTGATTTACGTTATCAATTACAAAAGAACACACCTCATCGTTTTAGAGACATTTGGCTTCAATTTCCTCAAGTGTCAAGTGTGGTCCCTTTGTCTCTGGAACATCGAAGATTCTTAAGACCAGAGACAAAACACATATCACACCAAACCCACAAAACAGTATCCCAGCTCCAAATAGTTCTCGCAAAACAGAGCCATGTGATTGTTAATCGTGATGTCCTCTAATAAAGAAGAAAAGGAGTTGCACAAATAGCAACACTAACTTAATTACATTTTTGAATTTGTGAGAGGGGTTTGAGATTGTTTGTTACTACCTTGATACATTTGAATTTGATAAACAAGTCACACAGAAAATGATTCAAAACCATAACGAACGAACAAATTGATACATATTAAAAAATTACTTGAATTACTAGTAATCTAGTATTTATAAACCAAAACCTCAGGCTTGGATTCGAACACCCATACAAAATCTTTTGGATACATACAACATTACTCCCATAGATATATATATTCACTCACGAGCAATAACAACAACTTGTTTTCCAACGTTCTTACCATGGAAGAGTCCCACAAGAGCTTCAGGACCTTTCTCAAGCCCATCAGCTACATCTTCCACGTACGTGATCTTCCCTTCTTTAATGTGCGGAAGCACAAAATCCAAGAACTTTGAGTATTTCTCGTAGAAATCAAACACTGCAAAGCCTTGAATGCGGATTCTTTTGTAGATTATGTTGGATAGGTTGTGTACACCTTCTTGGTTTTCAAGATTGTACTGTGAGATCATTCCACACACAGCGATACGTCCGTGTGGGTTCATGTTTAATAGCACTGCGTCTAGCATTTTGCCTCCTACGTTTTCAAAGTATATGTCAATGCCTGTAGGGAAACAC