Search result

BaseInfo

ncRNA ID ath_circ_025489
Species Arabidopsis thaliana
Class circRNA
Genome position 5:5577415-5582816[-/-]
Reference genome TAIR10
Source PlantcircBase
Method SMALT and Segemehl/find_circ/NA
Type exonic
Splice junction sequence CTAAAAGTCCAGTGTAATAAGATAATGGAACATCAGTATGTTGGATCTTGAAATGCGCGTGAGTCATTGGAGTGATAACACTGTACTCCTCCCATGCAACTGACCAACCGCACCAGATGCAGCTGACACATAAACTGTCTCTCCTTTCTTTGGAGAACAAACTTCATAAAACCCAGCATAGGCAGTCATACCAGGCATAC
Tissues siliques and seeds/leaf/root, leaf, aerial, inflorescences, seed, whole_plant
Exon boundary Yes-Yes
Splicing signals AC-CT
circRNA sequence NA
Genomic sequence CTAAAAGTCCAGTGTAATAAGATAATGGAACATCAGTATGTTGGATCTTGAAATGCGCGTGAGTCATTGGAGTGATAACACTGTACTCCTCCCATGCAACTATACCCCAGAGTAAATCTCCTTTCTTGTAATCTGGATGTCCAGATTCTATTATTCTAGACACTCCATACCCTTGGATTGGCTACACCAAAACACACAACGGCAACAACAACAGTCAACACGATAGACATAGCAAAAAAACAGAACCAAGAGAGACACAATTTCTTCTCAGTGTCTTCAAGAACACCAAATTGTCATCAATAAGAAGCATCTAGTTTCTTCACATGCAAACCAAACAAAATAAACATTATCATCATTACCTGGCCGGGAGTGTAAGCTTGAGCAAGAGCAGCAGTGGAAGGATCAGGTTTCCCCATGCGAATTCTCATGTAAGGATCGCATGACAAGTAGAGATTCTTCACTAGAACAGAGTTAGTACCTTCCGGAACCCTAAGTTCGACGGTGGTGGTAGTGAAATCGAAATCGGATTCCGTAGGGAAACCACTCACGTAGTCTTTCAATATGACTTGCTTGTTCGTCGCCGTCATCGTTGATTCTCGTGACTTCACCAAATTTGTTACTGCTTCTTCTTCGGTTTCTCTCGATGACGCCGCTGCTTTTATAGAGTCATCTCCAGTGTGCCACGAATTCATGATATCAACTTATCAAGTATGACGTCACTGCTTATGTGTTCTGATTTTTCACATTTTGGATTCTTTCTCTTTCGAGCGTTTTTTTCTCTCTTTGACTTTCACATTCCTTTTGCATACCTTTTTTTTTCCTCTTACGTATCTCTCCTTTCACATTTTGCTTTTCGTCTTTTTACACTAGAGAACTAATTCTAAACTCGTATTAAATTTCTCACTAATGATAGTAATTGGAAAAACTAGAGGTTTTTGACACCCTCAATACATTGTTAAGGTAAATGCAACTTTTTGCGGAGTCTTTTTGGAAATAAGATAGAAAACAGAGTTCGAAGGCTAAAACAGAGCAATCTGGTGCTTAAGTTCTTCTTGTATGGAACCAGACGCGGAGTACGTCTTCGAGTTTCGTCGAGCTATTTGGTATTAAACGTAACATTGTGGTTAATCCAGCTTCAATAGCTCTACTTTGAGTTACCAAAATTTAAACACGTTGTGGTCAATATCCTCGTTTGTTGGTCACCTAATTGACAAATTTGGGTAGGTTTACTAATTTCCAAATGGCTAAAATGTGATTGGTCCAGTCCACTTTGCCAATTGATGAAAGAAAAATTGAAATAGGTGGTAACGGTGAAAATAACTTTATAACATATCACACCAAACCCACAAAACAGTATCCCCATCTTCCGAATTAGTGTTCGCAACACTAACTGTTAAAACAGAGCACAAAACAGAGCCATGTCCTATAATAAAGAAGAAAAGGAGTTGCACAAATTGTATTCATTGATGCTTAAACACGCATACTTGGGAACAAGAGCTAGAAACATGGGTTTGTATTAGGCTTCTTTTTTGGATTTGTGAGAGAGGTTTTGGCTTGTTTGTTACTACTTACATACATTTTGTGAACCAAGTCACATAAAATGATAAAACCAATAACAAACAAATTAATCTTACTGTATATACTATAATTACTATTATTCATAAACCAAAAACTCACGGTTGGGTTCAACAGCCATACAAACTCTTGTTGGATAAATATAACATTTCTCCCAAATAAGTATTATTCCCTCACGAGCAATAAAACCTTACTCCCAATTAAAGTATTCATCATTCACGAGCAATAACAACAACTTGTTTCCCAACATTCTTACCATGGAAGAGTCCCACGAGAGCTTCAGGACCTTTCTCGAGCCCATCAGCTACATCTTCCACGTACGTTATCTTCCCTTCTTTAATGTGCGGATGCAGAAACTCCAAGAACTTTGAGTATTCGTCGTAGAAATCAGACACTACAAAGCCTTGAATGCGGATTCGTTTGTAGATTATGTTGGATAGGTTGTGTACACCTTCTTGGTTCTCAAGATTGTACTGTGAGATCATTCCACAGACAGCGATACGCCCGTGCATGTTCATGTTCATAAGCACTGCATCTAGCATTTTGCCTCCTACATTCTCAAAGTATATGTCAATGCCATTAGGGAAACACCTGGAAAAAAACGGAGAATATCTCTTAGATTGGTCAAAACGCAATTGAGAAGATCAATCAAAAAGTATTGCCGCTTTATTATGCAAACGGATTCTAACATTTATAGGCATAAAACACTTAGAAATAAGTAGTTTACTGAACCTTTTGAGCGCAGCACTAAGGTCAGGTTCTTCCTTGTAGTTAAATGCATAATCAAACCCAAACTTGGTCTTCAGGAGATCAACCTAACAGATACCCCAAAAATGGTTAATCATACTCTTGAAGGAGAACCAAGAAATATAAGGAATCAAAATATAGAAAATAATGATCAAATTCTCACCTTTTCTTTGCTACCAGCACTTCCAACAACATAACAGCCCATCATCTTAGCAAATTGTCCCACAAGCTGACCAACAGCACCAGATGCAGCTGACACATAAACTGTCTCTCCTTTCTTTGGAGAACAGATCTCATAAAACCCAACATATGCGGTCATACCAGGCATACCTTTCAGTAACAGAGAACACCCATCAAAGAGTGAATATATGAAACAGATCAACAAACCAAACAGTTGAAACTCTAGTCTTCTAGACTAAAGTTACAACCAATTCCATTGATATGTTTCTAAGATTTGTTAGACATCAAAACATTGTATCATCAAGAAGCAGATTTCCAAAATTTTACAGAGTGATTCCACCTTACAAAACTATGAAAAAGGCTGAGATTAACATACCGAGAAGTCCAGTGTAGTAAGACAATGGAACATCAGTATGTTGGATCTTGAAATGCTCGTGAGTCAAGTGATAACACTGTACTCCTCCCATGCAACTATACCCCAGAGTAGGTCTCCTTTTTTGTAATCTGAATGCCCAGATTCTATCACTGTAGACACTCCGTACCCTTCTATTGGCTGCACCAAAAACACAATGGAAACAAGAAGACTCAACGCGATAGAGATAGCGAAAAGAAAAACCCGAAGAGACACAATTTCTTCTCAGAGTCTTCAAGAACACCAAATTGTCATGTAGTTTCTACATCAATAAGAAGCATCTAGTTTCTTCACATGCAAACCAAACAAAATAAACATTATCATCATTACTTGGCCGGGAGTGTAAGCTTGAGCAAGAGCAGCAGTGGAAGGATTAGGTTTCCCCATGCAAATTCTCATGTAAGGATCGCATGACAAGTATAGGTTCTTCACCAGAACAGAGTTAGTACCTTCCGGAACCCTAAGTTCGACGGTGGTGGTAGTGAAATCGAAATTGGATTCCGTAGGGAAACCACTCACGTAGTCTTTCAATATAACTTGCTTGTTCGTCGCCGTCGTCATCGTTGATTCTTCTGACTTCACCAAATTTTGTTATTGCTTCTTCTTTGGTTTATCGATGACGCGGCCGCTTTTATAGTGGCTTCTCCAGTGTGCCACGAATTCATGATATCAACTTATCAAGTATGACGTCATTGCTTATGTGTTCTGATTTTTCACATTTGGATTCTCTCTTTCGAACGTTTTTTTTTTTTGACTTTCACATTTATTTCTCTGAATGTTAATCCAGCTTCAATAGCTCTCTACTGGTTATCAGGAGTCCTTCCCAAGAAAGTTTGCCTCAAGGTCTTCGCTATTAAAGAGGACTAGAGTCTAGACGAGACTTGCTTTGATGATCCTCGACCGGACGAGACTACTGACCTGAAAGTCATAATCGTTATGGTCAATATCCTCGTTTGCTGGTCACCTCATTAACAAATTTGGGTACAGAGAGACAGAACACATATGACATATCACACCAAACCCACAAAACAGTATCCAGCTCGCAATAGTTTCCGCAAAACAGAGCCATGTAATTGTAATTGTAATTTTCTTGTCCTCGAATAAAGAAAAAAAGGAATTGCACAAAATAGCAACAGTAACTGTATCCATTGATGTTTAAACAAAGCATACATGGGAACGTGAGCTATAGAAAACATGGGTTTGTATTTAGGCTCTGGGTTTGTATTTACTATTTAGCCTCTTTTTTCTTTTTTCATTTGTGAGAGAGGTTTGTCGTTATTTGTTATTATTACTTTCATACATTTTATGAACAAGCCACATAAAACGAATAACAAACAGATTCACATTACTATATATTATAGTTACTAGTATTATTCATAAACCAAAAACTCACGGTTGGGTTCAACAGACATACCAACTCTTGTTGGATAAATATAACATTTCTCCCAAATAAGTATTCTTCACTCACGCGCAATAAGACATTACTCCCAAATAAGTATTCTTCACTCACGAGCAATAACAACAACTTGTTTCCCAACGTTCTTACCATGGAAAAGCCCCACAAGAGCTTCAGGAGCTTTCTCGAGCCCATCAGCTACATCTTCCACATACGTTATCTTCCCTTCTTTAATGCGCGGAAGCACCAACTCCAAGAACTTTGGGTATTTGTCGTAGAAATCAGCCACTACAAAGCCTTGAATGCGTATTCGTTTGTAGATGATATTGGATAGGTTGTGTACACCTTCTTGATTTTCAAGATTGTACTGTGAGATCATTCCACAGACAGCGATACGCCCGTGTGGGTTCATGTTTAAGAGCACTGCATCTAGCATTTTGCCTCCTACGTTCTCAAAGTACATGTCGATGCCCTTGGGAAAACACCTGGGAAAAAGAAGAGAATCTCTCTTAGATTAGTAAGAGCACAATTGATTAGATATCAATCAATGAAGATAAACTCGTTTTTTCTTCGAAAAGAGTTCTAATTGCGGAGTTTCATTGGGGTTTTCTCCAGTTCTTAAGTGGTTTCCACTTAGATTCATGCTTCCATTTAGTTGTGAATTGCCGCTTTATTCTGCAAATCGATCCTAACAGTTGTAGACACCAAACACTTTGAAAAAACCCGTAACCGAACCTTTTGAGGGCAGCACTAAGGTCAGATTCTTCCTTGTAGTTAAATGCATCATCAAACCCAAACTTGGTCTTCAGGAGATCAACCTAACAGATCCCCCAAAAAGAAGTAAAAGGGCTAATTAATCTTTCTCTTGAAGGAGAACCAAGAAACATAAGGAATCAAAATATGGAAATGATGGTCAAATTCTCACCTTTTCTTTACTTCCAGCGCTTCCAACAACATAACAGCCCATCATCTTAGCAAATTGTCCCACAAGCTGACCAACCGCACCAGATGCAGCTGACACATAAACTGTCTCTCCTTTCTTTGGAGAACAAACTTCATAAAACCCAGCATAGGCAGTCATACCAGGCATAC