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BaseInfo

ncRNA ID novel_gar_miR324
Species Gossypium arboreum
Class miRNA
Genome position Chr10:20553582-20553651 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586;SRR1029588
Length 21
Mature sequence(if miRNA) 1 - UCAUUGAGUGCAGCGUUGAUG - 21
Stem-loop(if miRNA) --UC      U              -AUU     A
    AUUGAG GCAGCGUUGAUGAA    UCUCA U
    |||||| ||||||||||||||    ||||| U
    UAACUC CGUCGCGACUGCUU    AGAGU U
GUAC      U              AAGU     C
Stem-loop sequence UCAUUGAGUGCAGCGUUGAUGAAAUUUCUCAAUUUCUGAGAUGAAUUCGUCAGCGCUGCUCUCAAUCAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017763025.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  =||||||||||||||||||||
targets:714   UAUCAACGCUGCACUCAAUGA   734

0.0 PREDICTED: Gossypium arboreum laccase-11-like (LOC108463086), mRNA laccase-11-like(LOC108463086) coding protein psRNATarget
XM_017783783.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *||||||||||||||||||||
targets:771   AAUCAACGCUGCACUCAAUGA   791

0.0 PREDICTED: Gossypium arboreum laccase-4-like (LOC108480706), mRNA laccase-4-like(LOC108480706) coding protein psRNATarget
XM_017789385.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *|||||=||||||||||||||
targets:800   AAUCAAUGCUGCACUCAAUGA   820

1.0 PREDICTED: Gossypium arboreum laccase-2 (LOC108485533), mRNA laccase-2(LOC108485533) coding protein psRNATarget
XM_017792744.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  |||||||||||||||*|||||
targets:677   CAUCAACGCUGCACUGAAUGA   697

1.5 PREDICTED: Gossypium arboreum laccase-4 (LOC108488467), mRNA laccase-4(LOC108488467) coding protein psRNATarget
XM_017783901.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  |||||||||||||||*|||||
targets:745   CAUCAACGCUGCACUGAAUGA   765

1.5 PREDICTED: Gossypium arboreum laccase-4-like (LOC108480798), mRNA laccase-4-like(LOC108480798) coding protein psRNATarget
XM_017785151.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *|*|||=||||||||||||||
targets:732   GACCAAUGCUGCACUCAAUGA   752

2.0 PREDICTED: Gossypium arboreum laccase-2-like (LOC108482046), mRNA laccase-2-like(LOC108482046) coding protein psRNATarget
XM_017772471.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  ||||||=||||||||=|||||
targets:722   CAUCAAUGCUGCACUUAAUGA   742

2.5 PREDICTED: Gossypium arboreum laccase-4-like (LOC108470941), mRNA laccase-4-like(LOC108470941) coding protein psRNATarget
XM_017774472.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *|||||=||||||||=|||||
targets:643   AAUCAAUGCUGCACUUAAUGA   663

2.5 PREDICTED: Gossypium arboreum laccase-17-like (LOC108472910), transcript variant X2, mRNA laccase-17-like(LOC108472910) coding protein psRNATarget
XM_017774471.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *|||||=||||||||=|||||
targets:657   AAUCAAUGCUGCACUUAAUGA   677

2.5 PREDICTED: Gossypium arboreum laccase-17-like (LOC108472910), transcript variant X1, mRNA laccase-17-like(LOC108472910) coding protein psRNATarget
XM_017786988.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *|||||=|||||=||||||||
targets:759   GAUCAAUGCUGCGCUCAAUGA   779

2.5 PREDICTED: Gossypium arboreum laccase-2-like (LOC108483536), mRNA laccase-2-like(LOC108483536) coding protein psRNATarget
XM_017763384.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  ||||||=||||||||||||*|
targets:669   CAUCAAUGCUGCACUCAAUCA   689

2.5 PREDICTED: Gossypium arboreum laccase-7-like (LOC108463446), mRNA laccase-7-like(LOC108463446) coding protein psRNATarget
XM_017762807.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  ||||||=|||||||||||*||
targets:708   CAUCAAUGCUGCACUCAACGA   728

2.5 PREDICTED: Gossypium arboreum laccase-11-like (LOC108462895), mRNA laccase-11-like(LOC108462895) coding protein psRNATarget
XM_017784421.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  =|||||=||||||||*|||||
targets:756   UAUCAAUGCUGCACUGAAUGA   776

2.5 PREDICTED: Gossypium arboreum laccase-11-like (LOC108481264), mRNA laccase-11-like(LOC108481264) coding protein psRNATarget
XM_017752718.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  |=||||=|||||||||||*||
targets:764   CGUCAAUGCUGCACUCAACGA   784

2.5 PREDICTED: Gossypium arboreum laccase-17-like (LOC108454300), mRNA laccase-17-like(LOC108454300) coding protein psRNATarget
XM_017774239.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *=||||=|||||||||||*||
targets:769   AGUCAAUGCUGCACUCAACGA   789

2.5 PREDICTED: Gossypium arboreum laccase-4-like (LOC108472688), mRNA laccase-4-like(LOC108472688) coding protein psRNATarget
XM_017762979.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  *=||||=||*|||||||||||
targets:729   AGUCAAUGCGGCACUCAAUGA   749

2.5 PREDICTED: Gossypium arboreum laccase-17-like (LOC108463040), mRNA laccase-17-like(LOC108463040) coding protein psRNATarget
XM_017753373.1
ncRNA:21   GUAGUUGCGACGUGAGUUACU   1
  =|||||*|||||||||||*||
targets:1566   UAUCAAAGCUGCACUCAAGGA   1586

2.5 PREDICTED: Gossypium arboreum probable protein phosphatase 2C 38 (LOC108454796), mRNA probable protein phosphatase 2C 38(LOC108454796) coding protein psRNATarget
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