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BaseInfo

ncRNA ID	novel_gar_miR321
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr9:66747763-66747860 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR3180721
Length	21
Mature sequence(if miRNA)	1 - CAGGAAGAGGAAGAUGAAAUA - 21
Stem-loop(if miRNA)	--             CA     AU    - -G    UU   A   UAGAG   UUUCAUCUUCCUC  CUUGC  CCUU C  CAUU  CAG GCU     G   |||||||||||||  |||||  |||| |  ||||  ||| |||   AAAGUAGAAGGAG  GGACG  GGAA G  GUAA  GUU UGA     U AU             AA     CG    A AG    GG   G   CAGUU
Stem-loop sequence	UUUCAUCUUCCUCCACUUGCAUCCUUCGCAUUUUCAGAGCUUAGAGGUUUGACAGUGUUGGGAAUGGAGAAAGGGCGCAGGAAGAGGAAGAUGAAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017749879.1	ncRNA:21   AUAAAGUAGAAGGAGAAGGAC   1   ||||||||=|||||||||||| targets:1510   UAUUUCAUUUUCCUCUUCCUG   1530 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum glucomannan 4-beta-mannosyltransferase 9-like (LOC108452129), mRNA	glucomannan 4-beta-mannosyltransferase 9-like(LOC108452129)	coding protein	psRNATarget
XM_017790564.1	ncRNA:21   AUAAAGUAGAAGGAGAAGGAC   1   |=*|||||||||||||||||* targets:3272   UGCUUCAUCUUCCUCUUCCUC   3292 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum ubiquitin carboxyl-terminal hydrolase 16-like (LOC108486487), mRNA	ubiquitin carboxyl-terminal hydrolase 16-like(LOC108486487)	coding protein	psRNATarget
XM_017791948.1	ncRNA:21   AUAAAGUAGAAGGAGAAGGAC   1   *|||||*|||||||||||||* targets:154   GAUUUCCUCUUCCUCUUCCUU   174 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum heat shock factor protein HSF24-like (LOC108487575), mRNA	heat shock factor protein HSF24-like(LOC108487575)	coding protein	psRNATarget
XM_017752312.1	ncRNA:21   AUAAAGUAGAAGGAGAAGGAC   1   ***|||||||||||||||||* targets:115   CUCUUCAUCUUCCUCUUCCUC   135 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum glucan endo-1,3-beta-glucosidase 13 (LOC108454020), mRNA	glucan endo-1,3-beta-glucosidase 13(LOC108454020)	coding protein	psRNATarget
XM_017772394.1	ncRNA:21   AUAAAGUAGAAGGAGAAGGAC   1   ||*|||*|||||||||||||* targets:159   UACUUCCUCUUCCUCUUCCUC   179 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum disease resistance-like protein CSA1 (LOC108470889), transcript variant X1, mRNA	disease resistance-like protein CSA1(LOC108470889)	coding protein	psRNATarget
XM_017772395.1	ncRNA:21   AUAAAGUAGAAGGAGAAGGAC   1   ||*|||*|||||||||||||* targets:159   UACUUCCUCUUCCUCUUCCUC   179 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum disease resistance-like protein CSA1 (LOC108470889), transcript variant X2, mRNA	disease resistance-like protein CSA1(LOC108470889)	coding protein	psRNATarget
XM_017772397.1	ncRNA:21   AUAAAGUAGAAGGAGAAGGAC   1   ||*|||*|||||||||||||* targets:159   UACUUCCUCUUCCUCUUCCUC   179 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum disease resistance-like protein CSA1 (LOC108470889), transcript variant X3, mRNA	disease resistance-like protein CSA1(LOC108470889)	coding protein	psRNATarget
XM_017772398.1	ncRNA:21   AUAAAGUAGAAGGAGAAGGAC   1   ||*|||*|||||||||||||* targets:159   UACUUCCUCUUCCUCUUCCUC   179 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum disease resistance-like protein CSA1 (LOC108470889), transcript variant X4, mRNA	disease resistance-like protein CSA1(LOC108470889)	coding protein	psRNATarget
XM_017772399.1	ncRNA:21   AUAAAGUAGAAGGAGAAGGAC   1   ||*|||*|||||||||||||* targets:159   UACUUCCUCUUCCUCUUCCUC   179 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum disease resistance-like protein CSA1 (LOC108470889), transcript variant X5, mRNA	disease resistance-like protein CSA1(LOC108470889)	coding protein	psRNATarget