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BaseInfo

ncRNA ID	novel_gar_miR317
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr9:75426982-75427071 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR3180720
Length	24
Mature sequence(if miRNA)	1 - CGUGUUGAUGUGUAUGUGUGAGGC - 24
Stem-loop(if miRNA)	--     -   UG    G U       CA     UUUU   --     G   UUCAC CAU  GCAU A ACACGUA  GAUAG    AGA  AUCAA U   ||||| |||  |||| | |||||||  |||||    |||  |||||   GAGUG GUA  UGUA U UGUGCAU  CUGUC    UCU  UAGUU U CG     U   UG    G -       -A     ---U   AG     U
Stem-loop sequence	UUCACCAUUGGCAUGAUACACGUACAGAUAGUUUUAGAAUCAAGUUUUUGAUGAUCUUCUGUCAUACGUGUUGAUGUGUAUGUGUGAGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017769422.1	ncRNA:24   CGGAGUGUGUAUGUGUAGUUGUGC   1   |||||||||=|||||||||||||| targets:150   GCCUCACACGUACACAUCAACACG   173 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108468543 (LOC108468543), mRNA	uncharacterized LOC108468543(LOC108468543)	coding protein	psRNATarget
XM_017787685.1	ncRNA:24   CGGAGUGUGUAUGUGUAGUUGUGC   1   **|*||||||*||||||||=|||| targets:11   CACACACACACACACAUCAGCACG   34 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized protein KIAA0930 homolog (LOC108484058), transcript variant X3, mRNA	uncharacterized protein KIAA0930 homolog(LOC108484058)	coding protein	psRNATarget
XM_017787683.1	ncRNA:24   CGGAGUGUGUAUGUGUAGUUGUGC   1   **|*||||||*||||||||=|||| targets:11   CACACACACACACACAUCAGCACG   34 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized protein KIAA0930 homolog (LOC108484058), transcript variant X2, mRNA	uncharacterized protein KIAA0930 homolog(LOC108484058)	coding protein	psRNATarget
XM_017787682.1	ncRNA:24   CGGAGUGUGUAUGUGUAGUUGUGC   1   **|*||||||*||||||||=|||| targets:11   CACACACACACACACAUCAGCACG   34 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized protein KIAA0930 homolog (LOC108484058), transcript variant X1, mRNA	uncharacterized protein KIAA0930 homolog(LOC108484058)	coding protein	psRNATarget