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BaseInfo

ncRNA ID novel_gar_miR313
Species Gossypium arboreum
Class miRNA
Genome position Chr1:6566418-6566499 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586;SRR1029588;SRR3180715;SRR3180720;SRR3180721;SRR959748;SRR959750;SRR1029587
Length 21
Mature sequence(if miRNA) 1 - CUGAAGUGUUUGGGGGAACUC - 21
Stem-loop(if miRNA) --       UG U       U        UU  ACGACA    
  GUUCCUC  A CACUUCA UGGGGCUA  UU      CUUGA
  |||||||  | ||||||| ||||||||  ||      ||||C
  CAAGGGG  U GUGAAGU AUCCCGGU  AA      GGACA
CU       GU U       C        UU  -----G    
Stem-loop sequence GUUCCUCUGAUCACUUCAUUGGGGCUAUUUUACGACACUUGACACAGGGAAUUUGGCCCUACUGAAGUGUUUGGGGGAACUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017760230.1
ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1
  *|||||||||||||||||||*
targets:176   AAGUUCCCCCAAACACUUCAA   196

1.0 PREDICTED: Gossypium arboreum serine hydroxymethyltransferase 7-like (LOC108460652), transcript variant X1, mRNA serine hydroxymethyltransferase 7-like(LOC108460652) coding protein psRNATarget
XM_017792734.1
ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1
  |=|||*||||||||||||||*
targets:164   GGGUUACCCCAAACACUUCAA   184

2.0 PREDICTED: Gossypium arboreum sulfate transporter 2.1-like (LOC108488456), mRNA sulfate transporter 2.1-like(LOC108488456) coding protein psRNATarget
XM_017792733.1
ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1
  |=|||*||||||||||||||*
targets:164   GGGUUACCCCAAACACUUCAA   184

2.0 PREDICTED: Gossypium arboreum sulfate transporter 2.1-like (LOC108488455), mRNA sulfate transporter 2.1-like(LOC108488455) coding protein psRNATarget
XM_017761582.1
ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1
  *=|*|=|=|||||||||||||
targets:72   CGGAUUCUCCAAACACUUCAG   92

3.0 PREDICTED: Gossypium arboreum mitochondrial import inner membrane translocase subunit TIM22-2-like (LOC108461677), mRNA mitochondrial import inner membrane translocase subunit TIM22-2-like(LOC108461677) coding protein psRNATarget
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