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BaseInfo

ncRNA ID	novel_gar_miR312
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:91294932-91294995 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	24
Mature sequence(if miRNA)	1 - CAAGUCGAGUCAUUCUUUGGCGGA - 24
Stem-loop(if miRNA)	--U    GA    U   -    -     CCCUUC    GUCG  AAGA GUG UUCG UUUGA      A    ||||  |||| ||| |||| |||||      U    CGGU  UUCU UAC GAGC GAACU      G AGG    --    -   U    U     CUCGCU
Stem-loop sequence	UGUCGGAAAGAUGUGUUCGUUUGACCCUUCAUGUCGCUCUCAAGUCGAGUCAUUCUUUGGCGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017780249.1	ncRNA:24   AGGCGGUUUCUUACUGAGCUGAAC   1   |=|||||||||||||||||||||| targets:410   UUCGCCAAAGAAUGACUCGACUUG   433 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum uncharacterized LOC108477750 (LOC108477750), mRNA	uncharacterized LOC108477750(LOC108477750)	coding protein	psRNATarget
XM_017762450.1	ncRNA:24   AGGCGGUUUCUUACUGAGCUGAAC   1   |=|*|||||||||||||||||||| targets:1064   UUCUCCAAAGAAUGACUCGACUUG   1087 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum uncharacterized LOC108462508 (LOC108462508), mRNA	uncharacterized LOC108462508(LOC108462508)	coding protein	psRNATarget
XM_017779774.1	ncRNA:24   AGGCGGUUUCUUACUGAGCUGAAC   1   ||||*|||||=||||||||||||| targets:314   UCCGGCAAAGGAUGACUCGACUUG   337 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108477270 (LOC108477270), mRNA	uncharacterized LOC108477270(LOC108477270)	coding protein	psRNATarget
XM_017762282.1	ncRNA:24   AGGCGGUUUCUUACUGAGCUGAAC   1   ||||*|||||=||||||||||||| targets:482   UCCGGCAAAGGAUGACUCGACUUG   505 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108462316 (LOC108462316), mRNA	uncharacterized LOC108462316(LOC108462316)	coding protein	psRNATarget
XM_017780071.1	ncRNA:24   AGGCGGUUUCUUACUGAGCUGAAC   1   ||||*|||||=||||||||||||| targets:587   UCCGGCAAAGGAUGACUCGACUUG   610 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum uncharacterized LOC108477530 (LOC108477530), mRNA	uncharacterized LOC108477530(LOC108477530)	coding protein	psRNATarget
XM_017784655.1	ncRNA:24   AGGCGGUUUCUUACUGAGCUGAAC   1   |==|||||||||||=||||||||| targets:1448   UUUGCCAAAGAAUGGCUCGACUUG   1471 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108481536 (LOC108481536), mRNA	uncharacterized LOC108481536(LOC108481536)	coding protein	psRNATarget
XM_017775901.1	ncRNA:24   AGGCGGUUUCUUACUGAGCUGAAC   1   |=|*=|||=*|||||||||||||* targets:1543   UUCAUCAAGUAAUGACUCGACUUU   1566 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108474027 (LOC108474027), transcript variant X2, mRNA	uncharacterized LOC108474027(LOC108474027)	coding protein	psRNATarget
XM_017775900.1	ncRNA:24   AGGCGGUUUCUUACUGAGCUGAAC   1   |=|*=|||=*|||||||||||||* targets:1621   UUCAUCAAGUAAUGACUCGACUUU   1644 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum uncharacterized LOC108474027 (LOC108474027), transcript variant X1, mRNA	uncharacterized LOC108474027(LOC108474027)	coding protein	psRNATarget