Search result

BaseInfo

ncRNA ID	novel_gar_miR301
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr8:81272227-81272312 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588;SRR3180719;SRR3180720;SRR3180721;SRR1029586
Length	21
Mature sequence(if miRNA)	66 - UGAAUCUUGAUGAUGCUGCAU - 86
Stem-loop(if miRNA)	--                   U           CUAAGAG  U   GCGGCAUCGUCAAGAUUCA AGAAAAUUUUC       CC G   ||||||||||||||||||| |||||||||||       || U   CGUCGUAGUAGUUCUAAGU UCUUUUGAAAG       GG U UA                   -           UUCCGUA  U
Stem-loop sequence	GCGGCAUCGUCAAGAUUCAUAGAAAAUUUUCCUAAGAGCCUGUUUGGAUGCCUUGAAAGUUUUCUUGAAUCUUGAUGAUGCUGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017773455.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   |**||*||||||||||||||| targets:200   AAACAUCAUCAUCAAGAUUCA   220 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized LOC108471910 (LOC108471910), mRNA	uncharacterized LOC108471910(LOC108471910)	coding protein	psRNATarget
XM_017761102.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   ||||||||||||||=|||||* targets:1494   AUGCAGCAUCAUCAGGAUUCU   1514 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108461300), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108461300)	coding protein	psRNATarget
XM_017761101.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   ||||||||||||||=|||||* targets:1501   AUGCAGCAUCAUCAGGAUUCU   1521 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108461300), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108461300)	coding protein	psRNATarget
XM_017761103.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   ||||||||||||||=|||||* targets:1547   AUGCAGCAUCAUCAGGAUUCU   1567 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108461300), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108461300)	coding protein	psRNATarget
XM_017765194.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   =|||||||||||||=|||||* targets:1561   GUGCAGCAUCAUCAGGAUUCU   1581 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108464908), mRNA	floral homeotic protein APETALA 2-like(LOC108464908)	coding protein	psRNATarget
XM_017763509.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   =|||||||||||||=|||||* targets:1696   GUGCAGCAUCAUCAGGAUUCC   1716 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108463584), mRNA	floral homeotic protein APETALA 2-like(LOC108463584)	coding protein	psRNATarget
XM_017779172.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1774   CUGCAGCAUCAUCAGGAUUCC   1794 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108476820), transcript variant X5, mRNA	floral homeotic protein APETALA 2-like(LOC108476820)	coding protein	psRNATarget
XM_017779171.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1777   CUGCAGCAUCAUCAGGAUUCC   1797 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108476820), transcript variant X4, mRNA	floral homeotic protein APETALA 2-like(LOC108476820)	coding protein	psRNATarget
XM_017779170.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1783   CUGCAGCAUCAUCAGGAUUCC   1803 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108476820), transcript variant X3, mRNA	floral homeotic protein APETALA 2-like(LOC108476820)	coding protein	psRNATarget
XM_017779169.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1783   CUGCAGCAUCAUCAGGAUUCC   1803 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108476820), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC108476820)	coding protein	psRNATarget
XM_017779168.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1785   CUGCAGCAUCAUCAGGAUUCC   1805 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108476820), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC108476820)	coding protein	psRNATarget
XM_017748513.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1630   CUGCAGCAUCAUCAGGAUUCU   1650 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108450753), transcript variant X3, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108450753)	coding protein	psRNATarget
XM_017772026.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1607   CUGCAGCAUCAUCAGGAUUCC   1627 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108470648), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC108470648)	coding protein	psRNATarget
XM_017748512.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1696   CUGCAGCAUCAUCAGGAUUCU   1716 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108450753), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108450753)	coding protein	psRNATarget
XM_017772027.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1661   CUGCAGCAUCAUCAGGAUUCC   1681 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108470648), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC108470648)	coding protein	psRNATarget
XM_017748511.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1741   CUGCAGCAUCAUCAGGAUUCU   1761 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108450753), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108450753)	coding protein	psRNATarget
XM_017783489.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   *|||||||||||||=|||||* targets:1639   CUGCAGCAUCAUCAGGAUUCU   1659 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108480474), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC108480474)	coding protein	psRNATarget
XM_017791471.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   =*||||||||||||=|||||* targets:1774   GAGCAGCAUCAUCAGGAUUCC   1794 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108487196), transcript variant X2, mRNA	floral homeotic protein APETALA 2-like(LOC108487196)	coding protein	psRNATarget
XM_017791470.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGU   1   =*||||||||||||=|||||* targets:1783   GAGCAGCAUCAUCAGGAUUCC   1803 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108487196), transcript variant X1, mRNA	floral homeotic protein APETALA 2-like(LOC108487196)	coding protein	psRNATarget
XM_017781896.1	ncRNA:21   UACGUCG-UAGUAGUUCUAAGU   1   |||*|||-|||||||||||||| targets:1886   AUGAAGCCAUCAUCAAGAUUCA   1907 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum cytochrome P450 714C2-like (LOC108479353), mRNA	cytochrome P450 714C2-like(LOC108479353)	coding protein	psRNATarget