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BaseInfo

ncRNA ID	novel_gar_miR293
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr8:5560230-5560443 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588;SRR1029586
Length	24
Mature sequence(if miRNA)	1 - AGAAUUGUAUGAAACAGUGACGCC - 24
Stem-loop(if miRNA)	--  A                A                        C           A                    U                A      UUUG   AG AUUGUAUGAAACAGUG CGCCACGUCAUCUGUAUCCCUUUC AAUAGUUUUAU CCACAUCAGUAUUCUUAUCC GAAUUUCAGGAUUUUA UUUGAA    A   || |||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||   UC UAACAUACUUUGUUAC GCGGUGCAGUAGACAUAGGGAAAG UUAUCAAAAUA GGUGUAGUCAUAAGAAUGGG CUUAAAGUCCUAAAAU GGACUU    U UU  C                C                        A           C                    U                A      UUUU
Stem-loop sequence	AGAAUUGUAUGAAACAGUGACGCCACGUCAUCUGUAUCCCUUUCCAAUAGUUUUAUACCACAUCAGUAUUCUUAUCCUGAAUUUCAGGAUUUUAAUUUGAAUUUGAUUUUUUUCAGGAUAAAAUCCUGAAAUUCUGGGUAAGAAUACUGAUGUGGCAUAAAACUAUUAGAAAGGGAUACAGAUGACGUGGCGCCAUUGUUUCAUACAAUCCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017758885.1	ncRNA:24   CCGCAGUGACAAAGUAUGUUAAGA   1   |||||||||||||||||||||*|| targets:1532   GGCGUCACUGUUUCAUACAAUCCU   1555 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017758885.1	ncRNA:24   CCGCAGUGACAAAGUAUGUUAAGA   1   ||=||||||||||||||||||*|| targets:1801   GGUGUCACUGUUUCAUACAAUCCU   1824 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum enolase-like (LOC108459500), mRNA	enolase-like(LOC108459500)	coding protein	psRNATarget
XM_017757744.1	ncRNA:24   CCGCAGUGACAAAGUAUGUUAAGA   1   **=||*||||||||*||||||||| targets:374   UCUGUAACUGUUUCCUACAAUUCU   397 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ubiquitin-like protein ATG12 (LOC108458377), transcript variant X3, mRNA	ubiquitin-like protein ATG12(LOC108458377)	coding protein	psRNATarget
XM_017757742.1	ncRNA:24   CCGCAGUGACAAAGUAUGUUAAGA   1   **=||*||||||||*||||||||| targets:399   UCUGUAACUGUUUCCUACAAUUCU   422 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum ubiquitin-like protein ATG12 (LOC108458377), transcript variant X1, mRNA	ubiquitin-like protein ATG12(LOC108458377)	coding protein	psRNATarget
XM_017764021.1	ncRNA:24   CCGCAGUGACAAAGUAUGUUAAGA   1   **=**|||*||||||||=|||||| targets:1547   AAUCACACAGUUUCAUAUAAUUCU   1570 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum bifunctional L-3-cyanoalanine synthase/cysteine synthase D1-like (LOC108463981), transcript variant X1, mRNA	bifunctional L-3-cyanoalanine synthase/cysteine synthase D1-like(LOC108463981)	coding protein	psRNATarget