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BaseInfo

ncRNA ID novel_gar_miR292
Species Gossypium arboreum
Class miRNA
Genome position Chr8:49958018-49958099 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - ACACGGGCUGAGACACGGCUGUGU - 24
Stem-loop(if miRNA) --      GC  -   -    GCUGUGUGUCUCAAUUGUGUGG
  ACACGG  UG AGA CACG                      G
  ||||||  || ||| ||||
  UGUGCC  GG UCG UGUG                      G
GG      --  U   G    CGGACACACGAUUCCGGCACAG
Stem-loop sequence ACACGGGCUGAGACACGGCUGUGUGUCUCAAUUGUGUGGGGGACACGGCCUUAGCACACAGGCGUGUGGCUUGGCCGUGUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017753352.1
ncRNA:24   UGUGUCGGCACAGAGUCGGGCACA   1
  ***==||=|||||||*||||||||
targets:1755   UGCUGGCUGUGUCUCCGCCCGUGU   1778

2.5 PREDICTED: Gossypium arboreum protein DETOXIFICATION 54 (LOC108454780), mRNA protein DETOXIFICATION 54(LOC108454780) coding protein psRNATarget