Search result

BaseInfo

ncRNA ID novel_gar_miR288
Species Gossypium arboreum
Class miRNA
Genome position Chr8:40534704-40534926 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - AGGCAAUGUUUGAUAUUUGGCAAU - 24
Stem-loop(if miRNA) --   C          --A     -   UU  C        GC    U    C    UU   -AU      UU  C     AUA  C      -CC    -------       CACUCA
  AGG AAUGUUUGAU   UUUGG CAA  CG GGAAUCGU  CUUA CGUG UGGG  GCA   UUCUCG  UU UCAAA   AU GAAUGU   CUUU       AGAAUUU      U
  ||| ||||||||||   ||||| |||  || ||||||||  |||| |||| ||||  |||   ||||||  || |||||   || ||||||   ||||       |||||||      G
  UCC UUAUAAACUA   AAACU GUU  GC CUUUAGCG  GGGU GUGC AUCC  CGU   AAGGGC  AA GGUUU   UA CUUGUA   GAAA       UCUUAAA      U
UU   -          ACA     U   -U  U        UU    C    U    --   ACU      UU  C     --G  A      AUA    UAAAACU       AUUUUU
Stem-loop sequence AGGCAAUGUUUGAUAUUUGGCAAUUCGCGGAAUCGUGCCUUAUCGUGCUGGGUUGCAAUUUCUCGUUUUCUCAAAAUAAUCGAAUGUCCCUUUAGAAUUUCACUCAUGUUUUUUAAAAUUCUUCAAAAUAAAGAUAAUGUUCAAUGUUUGGCAAUUCGGGAAUCAUGCCCUAUCGUGCUGGGUUGCGAUUUCUCGUUUGUUCAAAACAAUCAAAUAUUCCUUU