ncRNA ID | novel_gar_miR288 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr8:40534704-40534926 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029587 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGGCAAUGUUUGAUAUUUGGCAAU - 24 |
Stem-loop(if miRNA) |
--   C          --A     -   UU  C        GC    U    C    UU   -AU      UU  C     AUA  C      -CC    -------       CACUCA   AGG AAUGUUUGAU   UUUGG CAA  CG GGAAUCGU  CUUA CGUG UGGG  GCA   UUCUCG  UU UCAAA   AU GAAUGU   CUUU       AGAAUUU      U   ||| ||||||||||   ||||| |||  || ||||||||  |||| |||| ||||  |||   ||||||  || |||||   || ||||||   ||||       |||||||      G   UCC UUAUAAACUA   AAACU GUU  GC CUUUAGCG  GGGU GUGC AUCC  CGU   AAGGGC  AA GGUUU   UA CUUGUA   GAAA       UCUUAAA      U UU   -          ACA     U   -U  U        UU    C    U    --   ACU      UU  C     --G  A      AUA    UAAAACU       AUUUUU |
Stem-loop sequence | AGGCAAUGUUUGAUAUUUGGCAAUUCGCGGAAUCGUGCCUUAUCGUGCUGGGUUGCAAUUUCUCGUUUUCUCAAAAUAAUCGAAUGUCCCUUUAGAAUUUCACUCAUGUUUUUUAAAAUUCUUCAAAAUAAAGAUAAUGUUCAAUGUUUGGCAAUUCGGGAAUCAUGCCCUAUCGUGCUGGGUUGCGAUUUCUCGUUUGUUCAAAACAAUCAAAUAUUCCUUU |