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BaseInfo

ncRNA ID novel_gar_miR282
Species Gossypium arboreum
Class miRNA
Genome position Chr8:13066846-13066957 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 1 - AUCGGUACGUAUUCUAGUCGAGCA - 24
Stem-loop(if miRNA) --           C   -   U  U  U      U   UUCCU     --   U  AUA
  UUCGAUUAGGA AUG AUC AU UG AUGUCC GGG     ACAGU  AUC GC   A
  ||||||||||| ||| ||| || || |||||| |||     |||||  ||| ||   U
  GAGCUGAUCUU UGC UGG UA AC UAUAGG CUC     UGUCG  UAG UG   U
AC           A   A   C  U  C      -   ---UU     GU   U  GCU
Stem-loop sequence UUCGAUUAGGACAUGAUCUAUUUGUAUGUCCUGGGUUCCUACAGUAUCUGCAUAAUUUCGGUUGAUUGGCUGUUUCUCGGAUAUCCAUAUCGGUACGUAUUCUAGUCGAGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017777009.1
ncRNA:24   ACGAGCUGAUCUUAUGCAUGGCUA   1
  |*|||||||||||||||||||*||
targets:430   UACUCGACUAGAAUACGUACCAAU   453

1.5 PREDICTED: Gossypium arboreum uncharacterized LOC108474986 (LOC108474986), mRNA uncharacterized LOC108474986(LOC108474986) coding protein psRNATarget