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BaseInfo

ncRNA ID novel_gar_miR261
Species Gossypium arboreum
Class miRNA
Genome position Chr8:73936298-73936384 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587;SRR1029588;SRR3180719;SRR3180721;SRR1029586
Length 21
Mature sequence(if miRNA) 1 - AAGGGAAAGACUAGAUUCAUA - 21
Stem-loop(if miRNA) --            C          - -AUUAUU        CC
  UGAAUCUAGUUU UCUCUUACUC C       CAUAUUUU  U
  |||||||||||| |||||||||| |       ||||||||  U
  ACUUAGAUCAGA AGGGAAUGAG G       GUAUAAAA  G
AU            A          A AACUUCU        AU
Stem-loop sequence UGAAUCUAGUUUCUCUCUUACUCCAUUAUUCAUAUUUUCCUUGUAAAAAUAUGUCUUCAAGAGAGUAAGGGAAAGACUAGAUUCAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017751284.1
ncRNA:21   AUACUUAGAUCAGAAAGGGAA   1
  |*|||*|=|||||||||||||
targets:2191   UCUGACUUUAGUCUUUCCCUU   2211

2.0 PREDICTED: Gossypium arboreum ABC transporter B family member 1 (LOC108453275), mRNA ABC transporter B family member 1(LOC108453275) coding protein psRNATarget
XM_017754025.1
ncRNA:21   AUACUUAGAUCAGAAAGGGAA   1
  **||||*||||||||*|||||
targets:1527   CUUGAAGCUAGUCUUGCCCUU   1547

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108455471 (LOC108455471), mRNA uncharacterized LOC108455471(LOC108455471) coding protein psRNATarget