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BaseInfo

ncRNA ID novel_gar_miR259
Species Gossypium arboreum
Class miRNA
Genome position Chr8:74111649-74111749 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587;SRR1029586
Length 21
Mature sequence(if miRNA) 81 - UUGCUGGAUUAUGAGCCUAAU - 101
Stem-loop(if miRNA) --      GA       C     ---C     C    G  U  UAUU     A
  UUGCUG  UUAUGAG CUAAU    UUUAU UCUU AU GU    UGGUU A
  ||||||  ||||||| |||||    ||||| |||| || ||    ||||| A
  AACGAC  AAUACUC GGUUA    GAAUG AGAA UA CG    ACCAG U
GA      UG       A     AAAA     U    G  -  --UU     U
Stem-loop sequence UUGCUGGAUUAUGAGCCUAAUCUUUAUCUCUUGAUUGUUAUUUGGUUAAAUUGACCAUUGCAUGAAGAUGUAAGAAAAAUUGGACUCAUAAGUCAGCAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017782758.1
ncRNA:21   UAAUCCGAGUAUUAGGUCGUU   1
  |*|||||||||||||||||||
targets:305   ACUAGGCUCAUAAUCCAGCAA   325

0.0 PREDICTED: Gossypium arboreum uncharacterized LOC108479909 (LOC108479909), mRNA uncharacterized LOC108479909(LOC108479909) coding protein psRNATarget
XM_017779187.1
ncRNA:21   UAAUCCGAGUAUUAGGUCGUU   1
  |*|||||||||||||||||||
targets:316   ACUAGGCUCAUAAUCCAGCAA   336

0.0 PREDICTED: Gossypium arboreum uncharacterized LOC108476830 (LOC108476830), mRNA uncharacterized LOC108476830(LOC108476830) coding protein psRNATarget