ncRNA ID | novel_gar_miR255 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr8:89577905-89578060 [-] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029587;SRR1029588 |
Length | 21 |
Mature sequence(if miRNA) | 136 - AAUGGGCAAAUUAGUGUCUAU - 156 |
Stem-loop(if miRNA) |
--    G          G          A   C      CAAACUC      -  ---  U  AAAUGUCACAAGGGACUGG   AAUG GCAAAUUAGU UCUAUAUAUU GAU AAAGAG       GUCCUU CU   GU AC                   U   |||| |||||||||| |||||||||| ||| ||||||       |||||| ||   || ||   UUAC CGUUUAAUUA GGAUAUGUAA CUA UUUCUU       UAGGAA GA   UU UU                   U UU    G          G          A   A      ---CAAC      A  GAA  -  UGACCGAACAACUGUCUUA |
Stem-loop sequence | AAUGGGCAAAUUAGUGUCUAUAUAUUAGAUCAAAGAGCAAACUCGUCCUUCUGUUACAAAUGUCACAAGGGACUGGUUAUUCUGUCAACAAGCCAGUUUUUAAGAGAAAGGAUCAACUUCUUUAAUCAAAUGUAUAGGGAUUAAUUUGCGCAUUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017792380.1 |
|
2.5 | PREDICTED: Gossypium arboreum probable LRR receptor-like serine/threonine-protein kinase At2g23950 (LOC108488066), mRNA | probable LRR receptor-like serine/threonine-protein kinase At2g23950(LOC108488066) | coding protein | psRNATarget |