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BaseInfo

ncRNA ID novel_gar_miR255
Species Gossypium arboreum
Class miRNA
Genome position Chr8:89577905-89578060 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587;SRR1029588
Length 21
Mature sequence(if miRNA) 136 - AAUGGGCAAAUUAGUGUCUAU - 156
Stem-loop(if miRNA) --    G          G          A   C      CAAACUC      -  ---  U  AAAUGUCACAAGGGACUGG
  AAUG GCAAAUUAGU UCUAUAUAUU GAU AAAGAG       GUCCUU CU   GU AC                   U
  |||| |||||||||| |||||||||| ||| ||||||       |||||| ||   || ||
  UUAC CGUUUAAUUA GGAUAUGUAA CUA UUUCUU       UAGGAA GA   UU UU                   U
UU    G          G          A   A      ---CAAC      A  GAA  -  UGACCGAACAACUGUCUUA
Stem-loop sequence AAUGGGCAAAUUAGUGUCUAUAUAUUAGAUCAAAGAGCAAACUCGUCCUUCUGUUACAAAUGUCACAAGGGACUGGUUAUUCUGUCAACAAGCCAGUUUUUAAGAGAAAGGAUCAACUUCUUUAAUCAAAUGUAUAGGGAUUAAUUUGCGCAUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017792380.1
ncRNA:21   UAUCUGUGAUUAAACGGGUAA   1
  |||||*|||=|||||||||||
targets:1775   AUAGAGACUGAUUUGCCCAUU   1795

2.5 PREDICTED: Gossypium arboreum probable LRR receptor-like serine/threonine-protein kinase At2g23950 (LOC108488066), mRNA probable LRR receptor-like serine/threonine-protein kinase At2g23950(LOC108488066) coding protein psRNATarget