Search result

BaseInfo

ncRNA ID	ath-miRf10966-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - CACUCGACCUCGGGGUUGAGUGAU - NA
Stem-loop(if miRNA)	AUG G   GA  G   G CACUCGACCUCGGGGUUGAGUG   U AUC  GU AUU U ||||||||||||||||||||||   | |||  || ||| GUGAGCUGGGGCUCCAGCUCAC   A UAG  UA UGG C                       AGA G   GG  G   A
Stem-loop sequence	CACUCGACCUCGGGGUUGAGUGAUGUGAUCGAGUGAUUGUCAGGUGAUGGGAUGAAGACACUCGACCUCGGGGUCGAGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183042.1	ncRNA:24   UAGUGAGUUGGGGCUCCAGCUCAC   1   |||||||=|||||||||||||||| targets:1616   AUCACUCGACCCCGAGGUCGAGUG   1639 Target Full Sequence	1.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:24   UAGUGAGUUGGGGCUCCAGCUCAC   1   |*|||||=|||||||||||||||| targets:853   ACCACUCGACCCCGAGGUCGAGUG   876 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183005.1	ncRNA:24   UAGUGAGUUGGGGCUCCAGCUCAC   1   =*|||||=|||=|||||||||||| targets:1863   GGCACUCGACCUCGAGGUCGAGUG   1886 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:24   UAGUGAGUUGGGGCUCCAGCUCAC   1   |*|||||=|||*|||||||||||| targets:1149   ACCACUCGACCACGAGGUCGAGUG   1172 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:24   UAGUGAGUUGGGGCUCCAGCUCAC   1   |*|||||=||||||*||||||||| targets:1208   ACCACUCGACCCCGUGGUCGAGUG   1231 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT014714.1	ncRNA:24   UAGUGAGUUGGGGCUCCAGCUCAC   1   ||-||||=|||||*|||||||||| targets:136   AU-ACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   UAGUGAGUUGGGGCUCCAGCUCAC   1   ||-||||=|||||*|||||||||| targets:136   AU-ACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:24   UAGUGAGUUGGGGCUCCAGCUCAC   1   |*||*|||||||||*||||||||* targets:168   ACCAGUCAACCCCGUGGUCGAGUA   191 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:24   UAGUGAGUUGGGGCUCCAGCUCAC   1   |*||*|||||||||*||||||||* targets:543   ACCAGUCAACCCCGUGGUCGAGUA   566 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:24   UAGUGAGUUGGGGCUCCAGCUCAC   1   |*||*|||||||||*||||||||* targets:543   ACCAGUCAACCCCGUGGUCGAGUA   566 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget