Search result

BaseInfo

ncRNA ID	novel_gar_miR249
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr8:103253248-103253367 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588
Length	21
Mature sequence(if miRNA)	1 - AGGUGCAGAUGCAGUUGCAGA - 21
Stem-loop(if miRNA)	--    U     C         A       --          GU  GAAAA        CUGU   UGCA UUGCA CUGCACCUU UUGUUUG  UUUCAGCUAU  CA     ACAAAACA    U   |||| ||||| ||||||||| |||||||  ||||||||||  ||     ||||||||   ACGU GACGU GACGUGGAG AACAAAC  GAGGUUGGUG  GU     UGUUUUGU    A AG    U     A         A       CA          UG  ----G        AUAA
Stem-loop sequence	UGCAUUUGCACCUGCACCUUAUUGUUUGUUUCAGCUAUGUCAGAAAAACAAAACACUGUUAAAUAUGUUUUGUGUGGUGUGGUUGGAGACCAAACAAAGAGGUGCAGAUGCAGUUGCAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017790973.1	ncRNA:21   AGACGUUGACGUAGACGUGGA   1   |||||||||||=||||||||| targets:59   UCUGCAACUGCGUCUGCACCU   79 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum vacuolar protein sorting-associated protein 9A-like (LOC108486760), mRNA	vacuolar protein sorting-associated protein 9A-like(LOC108486760)	coding protein	psRNATarget
XM_017782470.1	ncRNA:21   AGACGUUGACGUAGACGUGGA   1   ||||||*|||||||||||=|| targets:1117   UCUGCAUCUGCAUCUGCAUCU   1137 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum MAP3K epsilon protein kinase 1-like (LOC108479721), transcript variant X2, mRNA	MAP3K epsilon protein kinase 1-like(LOC108479721)	coding protein	psRNATarget
XM_017782471.1	ncRNA:21   AGACGUUGACGUAGACGUGGA   1   ||||||*|||||||||||=|| targets:1472   UCUGCAUCUGCAUCUGCAUCU   1492 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum MAP3K epsilon protein kinase 1-like (LOC108479721), transcript variant X3, mRNA	MAP3K epsilon protein kinase 1-like(LOC108479721)	coding protein	psRNATarget
XM_017782469.1	ncRNA:21   AGACGUUGACGUAGACGUGGA   1   ||||||*|||||||||||=|| targets:1776   UCUGCAUCUGCAUCUGCAUCU   1796 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum MAP3K epsilon protein kinase 1-like (LOC108479721), transcript variant X1, mRNA	MAP3K epsilon protein kinase 1-like(LOC108479721)	coding protein	psRNATarget
XM_017788579.1	ncRNA:21   AGACGUUGACGUAGACGUGGA   1   |||||||||||||||||*||* targets:169   UCUGCAACUGCAUCUGCUCCA   189 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum probable disease resistance protein At1g12280 (LOC108484697), mRNA	probable disease resistance protein At1g12280(LOC108484697)	coding protein	psRNATarget
XM_017787194.1	ncRNA:21   AGACGUUGACGUAGACGUGGA   1   *=||||*|||||*|||||||| targets:767   GUUGCACCUGCACCUGCACCU   787 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum zinc finger CCCH domain-containing protein 34-like (LOC108483670), mRNA	zinc finger CCCH domain-containing protein 34-like(LOC108483670)	coding protein	psRNATarget