ncRNA ID | ath-miR394b-3p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:28568808-28568928 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 90 - AGGUGGGCAUACUGCCAAUAG - 110 |
Stem-loop(if miRNA) |
  U     GA   -      U C             UCUC     UUAUGUGUAAUAAGUG CU ACAGA  UCU UUGGCA U UGUCCACCUCCUC    UAUAU                U || |||||  ||| |||||| | |||||||||||||    |||||                A GA UGUCU  AGA AACCGU A ACGGGUGGAGGAG    AUGCU                C   U     AG   U      C U             ---A     UUGUGUGGCAUCUAUG |
Stem-loop sequence | CUUACAGAGAUCUUUGGCAUUCUGUCCACCUCCUCUCUCUAUAUUUAUGUGUAAUAAGUGUACGUAUCUACGGUGUGUUUCGUAAGAGGAGGUGGGCAUACUGCCAAUAGAGAUCUGUUAG |
1 | PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004). |
2 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
3 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |