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BaseInfo

ncRNA ID ath-miR394b-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:28568808-28568928 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 90 - AGGUGGGCAUACUGCCAAUAG - 110
Stem-loop(if miRNA)   U     GA   -      U C             UCUC     UUAUGUGUAAUAAGUG
CU ACAGA  UCU UUGGCA U UGUCCACCUCCUC    UAUAU                U
|| |||||  ||| |||||| | |||||||||||||    |||||                A
GA UGUCU  AGA AACCGU A ACGGGUGGAGGAG    AUGCU                C
  U     AG   U      C U             ---A     UUGUGUGGCAUCUAUG
Stem-loop sequence CUUACAGAGAUCUUUGGCAUUCUGUCCACCUCCUCUCUCUAUAUUUAUGUGUAAUAAGUGUACGUAUCUACGGUGUGUUUCGUAAGAGGAGGUGGGCAUACUGCCAAUAGAGAUCUGUUAG

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
3 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).