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BaseInfo

ncRNA ID	novel_gar_miR240
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr8:123549635-123549710 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588;SRR3180715;SRR3180719;SRR3180720;SRR3180721;SRR1029586
Length	21
Mature sequence(if miRNA)	56 - UGAUUGAGCCGUGCCAAUAUC - 76
Stem-loop(if miRNA)	--      UG          UAAG     C     AAA   UAUUGG  CGGUUCAAUU    AGCAU ACUCU   G   ||||||  ||||||||||    ||||| |||||   AUAACC  GCCGAGUUAG    UUGUA UGAGA   G CU      GU          UUUA     U     AUU
Stem-loop sequence	UAUUGGUGCGGUUCAAUUUAAGAGCAUCACUCUAAAGGUUAAGAGUUAUGUUAUUUGAUUGAGCCGUGCCAAUAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017781712.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1269   GAUAUUGGCGCGGCUCAAUCA   1289 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum scarecrow-like protein 6 (LOC108479239), mRNA	scarecrow-like protein 6(LOC108479239)	coding protein	psRNATarget
XM_017787403.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1272   GAUAUUGGCGCGGCUCAAUCA   1292 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum scarecrow-like protein 6 (LOC108483812), mRNA	scarecrow-like protein 6(LOC108483812)	coding protein	psRNATarget
XM_017781711.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1378   GAUAUUGGCGCGGCUCAAUCA   1398 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum scarecrow-like protein 6 (LOC108479238), mRNA	scarecrow-like protein 6(LOC108479238)	coding protein	psRNATarget
XM_017768217.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1732   GAUAUUGGCGCGGCUCAAUCA   1752 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum scarecrow-like protein 27 (LOC108467555), mRNA	scarecrow-like protein 27(LOC108467555)	coding protein	psRNATarget
XM_017782902.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1782   GAUAUUGGCGCGGCUCAAUCA   1802 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum scarecrow-like protein 22 (LOC108480007), transcript variant X2, mRNA	scarecrow-like protein 22(LOC108480007)	coding protein	psRNATarget
XM_017782901.1	ncRNA:21   CUAUAACCGUGCCGAGUUAGU   1   |||||||||=||||||||||| targets:1802   GAUAUUGGCGCGGCUCAAUCA   1822 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum scarecrow-like protein 22 (LOC108480007), transcript variant X1, mRNA	scarecrow-like protein 22(LOC108480007)	coding protein	psRNATarget