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BaseInfo

ncRNA ID	novel_gar_miR239
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:103789708-103789871 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029586
Length	24
Mature sequence(if miRNA)	1 - AAAGGACCAAUUUGCUCUUUGAUC - 24
Stem-loop(if miRNA)	--               A     U   UAAAAAUUACAUUCAUUUCUACUGUUAAAAAUUAAUCUCUGUUUGUCAGCAUCAU   UCAAAGAGUAAAUUG UUCUU UGU                                                       G   ||||||||||||||| ||||| |||   AGUUUCUCGUUUAAC AGGAA GAC                                                       G CU               C     A   AAUUUUAAAAGCAGGAAAAUGAGAAUACUUAUUGGUCUUUCACUUUACACCGCAC
Stem-loop sequence	UCAAAGAGUAAAUUGAUUCUUUUGUUAAAAAUUACAUUCAUUUCUACUGUUAAAAAUUAAUCUCUGUUUGUCAGCAUCAUGGCACGCCACAUUUCACUUUCUGGUUAUUCAUAAGAGUAAAAGGACGAAAAUUUUAACAGAAAGGACCAAUUUGCUCUUUGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017757759.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAA   1   *|||||||||||||||||||*||| targets:1451   UAUCAAAGAGCAAAUUGGUCAUUU   1474 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X2, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017757758.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAA   1   *|||||||||||||||||||*||| targets:1511   UAUCAAAGAGCAAAUUGGUCAUUU   1534 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X1, mRNA	uncharacterized LOC108458388(LOC108458388)	coding protein	psRNATarget
XM_017754642.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAA   1   *||=||||||=||||||||||||* targets:796   AAUUAAAGAGUAAAUUGGUCCUUA   819 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum uncharacterized LOC108456052 (LOC108456052), transcript variant X1, mRNA	uncharacterized LOC108456052(LOC108456052)	coding protein	psRNATarget
XM_017752094.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAA   1   ||||||||||=|||||*||||||| targets:1119   GAUCAAAGAGUAAAUUAGUCCUUU   1142 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum universal stress protein PHOS32-like (LOC108453792), transcript variant X3, mRNA	universal stress protein PHOS32-like(LOC108453792)	coding protein	psRNATarget
XM_017777449.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAA   1   *|||||||||||||||||||=||* targets:1634   AAUCAAAGAGCAAAUUGGUCUUUC   1657 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum cytochrome P450 71D10-like (LOC108475481), mRNA	cytochrome P450 71D10-like(LOC108475481)	coding protein	psRNATarget
XM_017747287.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAA   1   |=|||||||*||||||||||=||| targets:1156   GGUCAAAGAACAAAUUGGUCUUUU   1179 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum bifunctional epoxide hydrolase 2-like (LOC108449909), mRNA	bifunctional epoxide hydrolase 2-like(LOC108449909)	coding protein	psRNATarget
XM_017752799.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAA   1   *||=||||||||||||||||*||* targets:2003   UAUUAAAGAGCAAAUUGGUCAUUC   2026 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108454360 (LOC108454360), transcript variant X2, mRNA	uncharacterized LOC108454360(LOC108454360)	coding protein	psRNATarget
XM_017752798.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAA   1   *||=||||||||||||||||*||* targets:2012   UAUUAAAGAGCAAAUUGGUCAUUC   2035 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108454360 (LOC108454360), transcript variant X1, mRNA	uncharacterized LOC108454360(LOC108454360)	coding protein	psRNATarget
XM_017768158.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAA   1   *||||||||*||*||||||||||| targets:1591   AAUCAAAGAACAUAUUGGUCCUUU   1614 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein trichome birefringence-like 5 (LOC108467517), transcript variant X3, mRNA	protein trichome birefringence-like 5(LOC108467517)	coding protein	psRNATarget
XM_017768156.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAA   1   *||||||||*||*||||||||||| targets:1594   AAUCAAAGAACAUAUUGGUCCUUU   1617 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein trichome birefringence-like 5 (LOC108467517), transcript variant X1, mRNA	protein trichome birefringence-like 5(LOC108467517)	coding protein	psRNATarget
XM_017768157.1	ncRNA:24   CUAGUUUCUCGUUUAACCAGGAAA   1   *||||||||*||*||||||||||| targets:1707   AAUCAAAGAACAUAUUGGUCCUUU   1730 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum protein trichome birefringence-like 5 (LOC108467517), transcript variant X2, mRNA	protein trichome birefringence-like 5(LOC108467517)	coding protein	psRNATarget