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BaseInfo

ncRNA ID novel_gar_miR236
Species Gossypium arboreum
Class miRNA
Genome position Chr1:14385733-14385804 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029586;SRR3180719;SRR3180721
Length 21
Mature sequence(if miRNA) 52 - UCGGAGCGGCCGGUCUUGUCA - 72
Stem-loop(if miRNA) --      C  CC       U    - C   UG   
  UCGGAG GG  GGUCUUG CAUC C UUU  CCCA
  |||||| ||  ||||||| |||| | |||  |||U
  AGCUUC UC  CUAGGAC GUAG G GGG  GGGU
GU      U  AA       U    A U   GU   
Stem-loop sequence UCGGAGCGGCCGGUCUUGUCAUCCCUUUUGCCCAUUGGGUGGGGUGAGAUGUCAGGAUCAACUUCUUCGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017753790.1
ncRNA:21   ACUGUUCUGGCCGGCGAGGCU   1
  |||||||||||||||||||||
targets:1926   UGACAAGACCGGCCGCUCCGA   1946

0.0 PREDICTED: Gossypium arboreum uncharacterized LOC108455200 (LOC108455200), mRNA uncharacterized LOC108455200(LOC108455200) coding protein psRNATarget
XM_017753787.1
ncRNA:21   ACUGUUCUGGCCGGCGAGGCU   1
  |||||||||||||||||||||
targets:2169   UGACAAGACCGGCCGCUCCGA   2189

0.0 PREDICTED: Gossypium arboreum uncharacterized LOC108455194 (LOC108455194), mRNA uncharacterized LOC108455194(LOC108455194) coding protein psRNATarget