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BaseInfo

ncRNA ID novel_gar_miR230
Species Gossypium arboreum
Class miRNA
Genome position Chr8:96733127-96733189 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 40 - CUUUGUGCUGACGUGGACAAAACA - 63
Stem-loop(if miRNA) --UUUA      A           C   -  U
      GUCUAC UCAGCACAAAG GCU CC U
      |||||| ||||||||||| ||| ||
      CAGGUG AGUCGUGUUUC CGA GG A
ACAAAA      C           U   A  A
Stem-loop sequence UUUAGUCUACAUCAGCACAAAGCGCUCCUUAAGGAAGCUCUUUGUGCUGACGUGGACAAAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017784438.1
ncRNA:24   ACAAAACAGGUGCAGUCGUGUUUC   1
  *||||||||||=||||||||||||
targets:10   CGUUUUGUCCAUGUCAGCACAAAG   33

1.5 PREDICTED: Gossypium arboreum serine/threonine-protein phosphatase 7 long form homolog (LOC108481281), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC108481281) coding protein psRNATarget
XM_017780527.1
ncRNA:24   ACAAAACAGGUGCAGUCGUGUUUC   1
  ||*|||||||||*||||||||||*
targets:92   UGCUUUGUCCACAUCAGCACAAAU   115

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108478102 (LOC108478102), mRNA uncharacterized LOC108478102(LOC108478102) coding protein psRNATarget