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BaseInfo

ncRNA ID	novel_gar_miR229
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr8:95110698-95110883 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588
Length	21
Mature sequence(if miRNA)	166 - AAAGACUAGUUUGCUCUUUGA - 186
Stem-loop(if miRNA)	--     A          ----CU      AG   A     -U                 AGUUCCUAUA  UUGACAUGAGCUAUAUGUGGCACAGC   AAAGA CAAAUUGGUC      GUUAAA  UUU AUCCA  UUUUACUGUUAAAAAUU          GG                          A   ||||| ||||||||||      ||||||  ||| |||||  |||||||||||||||||          ||   UUUCU GUUUGAUCAG      CAAUUU  AAA UAGGU  AAGAUGAUAAUUUUUGA          GC                          U AG     C          AAAAAU      AA   A     UU                 -----CUGUA  GACCGCCUUAUUUGUCUAUCAACAUG
Stem-loop sequence	AAAGAACAAAUUGGUCCUGUUAAAAGUUUAAUCCAUUUUUACUGUUAAAAAUUAGUUCCUAUAGGUUGACAUGAGCUAUAUGUGGCACAGCAUGUACAACUAUCUGUUUAUUCCGCCAGCGAUGUCAGUUUUUAAUAGUAGAAUUUGGAUAAAAAAUUUAACUAAAAAGACUAGUUUGCUCUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017778575.1	ncRNA:21   AGUUUCUCGUUUGAUCAGAAA   1   |=||=*|*||||||||||||| targets:3554   UUAAGAAACAAACUAGUCUUU   3574 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum putative disease resistance protein RGA1 (LOC108476374), transcript variant X1, mRNA	putative disease resistance protein RGA1(LOC108476374)	coding protein	psRNATarget
XM_017778259.1	ncRNA:21   AGUUUCUCGUUUGAUCAGAAA   1   |=||=*|*||||||||||||| targets:3554   UUAAGAAACAAACUAGUCUUU   3574 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum putative disease resistance protein RGA1 (LOC108476145), transcript variant X1, mRNA	putative disease resistance protein RGA1(LOC108476145)	coding protein	psRNATarget
XM_017778576.1	ncRNA:21   AGUUUCUCGUUUGAUCAGAAA   1   |=||=*|*||||||||||||| targets:3581   UUAAGAAACAAACUAGUCUUU   3601 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum putative disease resistance protein RGA1 (LOC108476374), transcript variant X2, mRNA	putative disease resistance protein RGA1(LOC108476374)	coding protein	psRNATarget
XM_017778260.1	ncRNA:21   AGUUUCUCGUUUGAUCAGAAA   1   |=||=*|*||||||||||||| targets:3581   UUAAGAAACAAACUAGUCUUU   3601 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum putative disease resistance protein RGA1 (LOC108476145), transcript variant X2, mRNA	putative disease resistance protein RGA1(LOC108476145)	coding protein	psRNATarget