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BaseInfo

ncRNA ID	novel_gar_miR223
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:103636105-103636200 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587
Length	21
Mature sequence(if miRNA)	76 - UACAGGGACUAAUUUGCCUAU - 96
Stem-loop(if miRNA)	--                   CU                    GU  C   GGGCAAAUUAGUCUUUGUA  CUAGAUUAAAGAGCAAACUG  CU C   |||||||||||||||||||  ||||||||||||||||||||  ||   UCCGUUUAAUCAGGGACAU  GAUUUGGUUUCUUGUUUGAC  GG A UA                   CU                    UU  A
Stem-loop sequence	GGGCAAAUUAGUCUUUGUACUCUAGAUUAAAGAGCAAACUGGUCUCCAAGGUUCAGUUUGUUCUUUGGUUUAGUCUACAGGGACUAAUUUGCCUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017761048.1	ncRNA:21   UAUCCGUUUAAUCAGGGACAU   1   ||||*|||||||||||||||| targets:1946   AUAGACAAAUUAGUCCCUGUA   1966 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum heat shock factor protein HSF8-like (LOC108461261), mRNA	heat shock factor protein HSF8-like(LOC108461261)	coding protein	psRNATarget
XM_017760535.1	ncRNA:21   UAUCCGUUUAAUCAGGGACAU   1   ||||||||||||||=|||||| targets:1651   AUAGGCAAAUUAGUUCCUGUA   1671 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum serine/threonine-protein kinase AFC1 (LOC108460853), transcript variant X2, mRNA	serine/threonine-protein kinase AFC1(LOC108460853)	coding protein	psRNATarget
XM_017760534.1	ncRNA:21   UAUCCGUUUAAUCAGGGACAU   1   ||||||||||||||=|||||| targets:1772   AUAGGCAAAUUAGUUCCUGUA   1792 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum serine/threonine-protein kinase AFC1 (LOC108460853), transcript variant X1, mRNA	serine/threonine-protein kinase AFC1(LOC108460853)	coding protein	psRNATarget
XM_017753157.1	ncRNA:21   UAUCCGUUUAAUCAGGGACAU   1   ||||||||||||*|||||||| targets:787   AUAGGCAAAUUAUUCCCUGUA   807 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum peptide methionine sulfoxide reductase B5-like (LOC108454631), mRNA	peptide methionine sulfoxide reductase B5-like(LOC108454631)	coding protein	psRNATarget
XM_017768662.1	ncRNA:21   UAUCCGUUUAAUCAGGGACAU   1   |||||=||||||*|||||||| targets:1765   AUAGGUAAAUUAAUCCCUGUA   1785 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum uncharacterized LOC108467851 (LOC108467851), mRNA	uncharacterized LOC108467851(LOC108467851)	coding protein	psRNATarget