Search result

BaseInfo

ncRNA ID	ath-miRf10963-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - UACUCGACCUGGGGGUCGAGUAUGU - NA
Stem-loop(if miRNA)	-    --U          GG         -  GUG   AGA GAGCU GAGG   UACUCGACCU  GGGUCGAGU AU   GGA   A ||||| ||||   ||||||||||  ||||||||| ||   ||| CUUGG CUUC   AUGAGCUGGG  UCCAGCUCA UG   CCU   U      U    UGU          GG         C  AAA   CGG
Stem-loop sequence	GAGCUGAGGUUACUCGACCUGGGGGUCGAGUAUGUGGGAAGAAUGGCUCCAAAGUCACUCGACCUGGGGGUCGAGUAUGUCUUCUGGUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT025674.1	ncRNA:25   UGUAUGAGCUGGGGGUCCAGCUCAU   1   |=*|||||||||||||||||||||| targets:185   AUCUACUCGACCCCCAGGUCGAGUA   209 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:25   UGUAUGAGCUGGGGGUCCAGCUCAU   1   =***||||||||||||||||||||| targets:1102   GACCACUCGACCCCCAGGUCGAGUA   1126 Target Full Sequence	0.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGUAUGAGCUGGGGGUCCAGCUCAU   1   *|||||||||||||||||||||||= targets:134   CCAUACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGUAUGAGCUGGGGGUCCAGCUCAU   1   *|||||||||||||||||||||||= targets:134   CCAUACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGUAUGAGCUGGGGGUCCAGCUCAU   1   |=*||||||||||||*||||||||| targets:179   AUCUACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGUA-UGAGCUGGGGGUCCAGCUCAU   1   ||=*-|||||||||||*||||||||| targets:227   ACGCCACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGUAUGAGCUGGGGGUCCAGCUCAU   1   |=*||||||||||||*||||||||| targets:179   AUCUACUCGACCCCCUGGUCGAGUA   203 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGUA-UGAGCUGGGGGUCCAGCUCAU   1   ||=*-|||||||||||*||||||||| targets:227   ACGCCACUCGACCCCCUGGUCGAGUA   252 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:25   UGUAUGAGCUGGGGGUCCAGCUCAU   1   *|*||||||||||||*||||||||| targets:306   CCUUACUCGACCCCCUGGUCGAGUA   330 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
EF183042.1	ncRNA:25   UGUA-UGAGCUGGGGGUCCAGCUCAU   1   |*||-|||||||||||*||||||||| targets:1568   AGAUCACUCGACCCCCUGGUCGAGUA   1593 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:25   UGUA-UGAGCUGGGGGUCCAGCUCAU   1   |||*-|||||||||||*||||||||| targets:87   ACACCACUCGACCCCCUGGUCGAGUA   112 Target Full Sequence	1.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:25   UGUA------UGAGCUGGGGGUCCAGCUCAU   1   |==|------|||||||||||*||||||||| targets:116   AUGUCAAACCACUCGACCCCCUGGUCGAGUA   146 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:25   UGUA------UGAGCUGGGGGUCCAGCUCAU   1   |==|------|||||||||||*||||||||| targets:491   AUGUCAAACCACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:25   UGUA------UGAGCUGGGGGUCCAGCUCAU   1   |==|------|||||||||||*||||||||| targets:491   AUGUCAAACCACUCGACCCCCUGGUCGAGUA   521 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGUA-UGAGCUGGGGGUCCAGCUCAU   1   |==|-||||*||||||*||||||||| targets:298   AUGUUACUCAACCCCCUGGUCGAGUA   323 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGUA-UGAGCUGGGGGUCCAGCUCAU   1   |==|-||||*||||||*||||||||| targets:298   AUGUUACUCAACCCCCUGGUCGAGUA   323 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:25   UGUA-UGAGCUGGGGGUCCAGCUCAU   1   ||||-||*||||||||*||||||||| targets:580   ACAUUACYCGACCCCCUGGUCGAGUA   605 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:25   UGUA-UGAGCUGGGGGUCCAGCUCAU   1   ||||-||||||||||*|||||||||= targets:1614   ACAUCACUCGACCCCGAGGUCGAGUG   1639 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:25   UGUA----UGAGCUGGGGGUCCAGCUCAU   1   ||*|----||||||||||*|||||||||= targets:848   ACCUCACCACUCGACCCCGAGGUCGAGUG   876 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
AY227642.1	ncRNA:25   UGUAUGAGCUGGGGGUCCAGCUCAU   1   =***|||||||**|||||||||||| targets:806   GACCACUCGACAACCAGGUCGAGUA   830 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget