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BaseInfo

ncRNA ID	novel_gar_miR219
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr7:55046467-55046550 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588;SRR1029586
Length	22
Mature sequence(if miRNA)	1 - UCUUGCUCAAAUGAGUAUUCCA - 22
Stem-loop(if miRNA)	--U                 UC    --    --GU    UUAA    CUUGCUCAAAUGAGUAU  CAGU  CACA    UACA    U    |||||||||||||||||  ||||  ||||    ||||    GAACGAGUUUACUCGUA  GUCA  GUGU    AUGU    U AAC                 GA    UU    AGGU    UCGU
Stem-loop sequence	UCUUGCUCAAAUGAGUAUUCCAGUCACAGUUACAUUAAUUUGCUUGUAUGGAUGUGUUACUGAGAUGCUCAUUUGAGCAAGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017792166.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*||||||||||||||| targets:319   UGGAAUUCUCAUUUGAGCAAGA   340 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum transcription factor MYB114-like (LOC108487811), mRNA	transcription factor MYB114-like(LOC108487811)	coding protein	psRNATarget
XM_017765258.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*||||||||||||||| targets:366   UGGAAUUCUCAUUUGAGCAAGA   387 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum transcription factor MYB114-like (LOC108464971), mRNA	transcription factor MYB114-like(LOC108464971)	coding protein	psRNATarget
XM_017791096.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*||||||||||||||| targets:380   UGGAAUUCUCAUUUGAGCAAGA   401 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum transcription factor MYB114-like (LOC108486926), mRNA	transcription factor MYB114-like(LOC108486926)	coding protein	psRNATarget
XM_017759183.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*||||||||||||||| targets:452   UGGAAUUCUCAUUUGAGCAAGA   473 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum transcription factor MYB114-like (LOC108459780), mRNA	transcription factor MYB114-like(LOC108459780)	coding protein	psRNATarget
XM_017749656.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*||||||||||||||| targets:440   UGGAAUUCUCAUUUGAGCAAGA   461 Target Full Sequence	1.0	PREDICTED: Gossypium arboreum transcription factor MYB114-like (LOC108451939), mRNA	transcription factor MYB114-like(LOC108451939)	coding protein	psRNATarget
JQ868555.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*|*||||||||||||| targets:325   UGGAAUUCCCAUUUGAGCAAGA   346 Target Full Sequence	2.0	Gossypium arboreum isolate A2 MYB2 mRNA, complete cds	NA	coding protein	psRNATarget
AY626160.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*|*||||||||||||| targets:398   UGGAAUUCCCAUUUGAGCAAGA   419 Target Full Sequence	2.0	Gossypium arboreum myb family transcription factor 2/fiber factor 1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_017769755.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*|*||||||||||||| targets:401   UGGAAUUCCCAUUUGAGCAAGA   422 Target Full Sequence	2.0	PREDICTED: Gossypium arboreum transcription factor MYB114-like (LOC108468886), mRNA	transcription factor MYB114-like(LOC108468886)	coding protein	psRNATarget
XM_017754707.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   |||||*||||||||||||||*| targets:367   UGGAACACUCAUUUGAGCAAAA   388 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription factor MYB114-like (LOC108456110), mRNA	transcription factor MYB114-like(LOC108456110)	coding protein	psRNATarget
XM_017770208.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||||*|||||||*||||| targets:322   UGGAAUACCCAUUUGAACAAGA   343 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription factor WER-like (LOC108469315), mRNA	transcription factor WER-like(LOC108469315)	coding protein	psRNATarget
NM_001330017.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   |||||||*|||||||||*|||| targets:409   UGGAAUAGUCAUUUGAGGAAGA   430 Target Full Sequence	2.5	Gossypium arboreum transcription factor WER (LOC108459778), mRNA	transcription factor WER(LOC108459778)	coding protein	psRNATarget
AY633559.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   |||||||*|||||||||*|||| targets:409   UGGAAUAGUCAUUUGAGGAAGA   430 Target Full Sequence	2.5	Gossypium arboreum myb family transcription factor 109 (MYB109) mRNA, complete cds	NA	coding protein	psRNATarget
XM_017790493.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||||*|||||||*||||| targets:341   UGGAAUACCCAUUUGAACAAGA   362 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum transcription factor MYB82-like (LOC108486436), mRNA	transcription factor MYB82-like(LOC108486436)	coding protein	psRNATarget
XM_017753050.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   **||=||=*||||||||||||| targets:531   GAGAGUAUGCAUUUGAGCAAGA   552 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum kinesin-3-like (LOC108454551), mRNA	kinesin-3-like(LOC108454551)	coding protein	psRNATarget