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BaseInfo

ncRNA ID	novel_gar_miR201
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr11:101977894-101978087 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029586
Length	24
Mature sequence(if miRNA)	171 - AAAGACUAGUUUGCUCUUUGAUCU - 194
Stem-loop(if miRNA)	--      A               -CU    U     C         U  C         ----------------------CUUAUC     ACUUCAGUAUGAUGU   AUCAAA AGUAAAUUGGUCUUU   GUUA AAAUU CAUUCAUUU UA UGUUAAAAA                            CAUAU               A   |||||| |||||||||||||||   |||| ||||| ||||||||| || |||||||||                            |||||               C   UAGUUU UCGUUUGAUCAGAAA   CAAU UUUAA GUAGGUAAA AU ACAAUUUUU                            CACUG               A UC      C               AAU    U     A         C  A         CACCACACCAACUAUCUUAUUAAUCUAU     UGUACCGUACAGUGU
Stem-loop sequence	AUCAAAAAGUAAAUUGGUCUUUCUGUUAUAAAUUCCAUUCAUUUUUACUGUUAAAAACUUAUCCAUAUACUUCAGUAUGAUGUACAUGUGACAUGCCAUGUGUCACUAUCUAAUUAUUCUAUCAACCACACCACUUUUUAACAAUACAAAUGGAUGAAAUUUUUAACUAAAAAGACUAGUUUGCUCUUUGAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017778259.1	ncRNA:24   UCUAGUUUCUCGUUUGAUCAGAAA   1   |*||=||=*|*||||||||||||| targets:3551   AAAUUAAGAAACAAACUAGUCUUU   3574 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum putative disease resistance protein RGA1 (LOC108476145), transcript variant X1, mRNA	putative disease resistance protein RGA1(LOC108476145)	coding protein	psRNATarget
XM_017778575.1	ncRNA:24   UCUAGUUUCUCGUUUGAUCAGAAA   1   |*||=||=*|*||||||||||||| targets:3551   AAAUUAAGAAACAAACUAGUCUUU   3574 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum putative disease resistance protein RGA1 (LOC108476374), transcript variant X1, mRNA	putative disease resistance protein RGA1(LOC108476374)	coding protein	psRNATarget
XM_017778260.1	ncRNA:24   UCUAGUUUCUCGUUUGAUCAGAAA   1   |*||=||=*|*||||||||||||| targets:3578   AAAUUAAGAAACAAACUAGUCUUU   3601 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum putative disease resistance protein RGA1 (LOC108476145), transcript variant X2, mRNA	putative disease resistance protein RGA1(LOC108476145)	coding protein	psRNATarget
XM_017778576.1	ncRNA:24   UCUAGUUUCUCGUUUGAUCAGAAA   1   |*||=||=*|*||||||||||||| targets:3578   AAAUUAAGAAACAAACUAGUCUUU   3601 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum putative disease resistance protein RGA1 (LOC108476374), transcript variant X2, mRNA	putative disease resistance protein RGA1(LOC108476374)	coding protein	psRNATarget