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BaseInfo

ncRNA ID novel_gar_miR200
Species Gossypium arboreum
Class miRNA
Genome position Chr7:23694778-23694866 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 66 - AAGGUUUAACUGAAGAUGAGCGCU - 89
Stem-loop(if miRNA) --     UU       ---        CUAUCA   A   AG   AAU
  AAGGU  AACUGAA   GAUGAGCG      UGC UUG  UGA   U
  |||||  |||||||   ||||||||      ||| |||  |||   C
  UUCCA  UUGAUUU   UUACUCGU      ACG AAU  ACU   C
UC     -U       UUU        ----AA   C   CU   AGA
Stem-loop sequence AAGGUUUAACUGAAGAUGAGCGCUAUCAUGCAUUGAGUGAAAUUCCAGAUCAUCUAACGCAAAUGCUCAUUUUUUUUAGUUUACCUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017758769.1
ncRNA:24   UCGCGAGUAGAAGUCAAUUUGGAA   1
  ||-|=||*|||||||||=||||||
targets:355   AG-GUUCUUCUUCAGUUGAACCUU   377

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108459406 (LOC108459406), mRNA uncharacterized LOC108459406(LOC108459406) coding protein psRNATarget