Search result

BaseInfo

ncRNA ID	novel_gar_miR176
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr7:78877661-78877807 [-]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588;SRR1029586
Length	21
Mature sequence(if miRNA)	127 - UGCAUUUGCACCUGCACCUUC - 147
Stem-loop(if miRNA)	--    U     C            -  U         UUG   CAG     GAAA   ---AA      - A   U   UGCA UUGCA CUGCACCUUCUU GU UUCUUCAGU   GUU   CUUCA    CUA     GCAUGA C GUC C   |||| ||||| |||||||||||| || |||||||||   |||   |||||    |||     |||||| | |||   ACGU AAUGU GACGUGGAAGAA CA GAGAGGUUA   UAG   GAAGU    GAU     UGUACU G CGG A GG    U     A            A  U         -UA   AAG     -GGC   AUUUG      A A   U
Stem-loop sequence	UGCAUUUGCACCUGCACCUUCUUGUUUUCUUCAGUUUGGUUCAGCUUCAGAAACUAAAGCAUGACAGUCUCAUGGCAGAUCAUGUGUUUAUAGCGGUGAAGGAAGAUAUAUUGGAGAGUACAAAGAAGGUGCAGAUGUAAUUGCAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017766023.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*||||||||||||||||||| targets:295   GCAGGUGCAGGUGCAAAUGCA   315 Target Full Sequence	0.0	PREDICTED: Gossypium arboreum uncharacterized LOC108465652 (LOC108465652), mRNA	uncharacterized LOC108465652(LOC108465652)	coding protein	psRNATarget
XM_017779126.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*||||||*|||||||||||* targets:1078   GCAGGUGCUGGUGCAAAUGCC   1098 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum tetratricopeptide repeat protein 37 (LOC108476793), mRNA	tetratricopeptide repeat protein 37(LOC108476793)	coding protein	psRNATarget
XM_017773562.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   **=||||*||||||||||||* targets:391   UCGGGUGAAGGUGCAAAUGCC   411 Target Full Sequence	3.0	PREDICTED: Gossypium arboreum putative disease resistance protein At1g63350 (LOC108472038), mRNA	putative disease resistance protein At1g63350(LOC108472038)	coding protein	psRNATarget