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BaseInfo

ncRNA ID novel_gar_miR171
Species Gossypium arboreum
Class miRNA
Genome position Chr7:112329045-112329187 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587;SRR1029588;SRR3180715;SRR3180719;SRR3180720;SRR3180721;SRR1029586
Length 21
Mature sequence(if miRNA) 1 - GGAAUCUUGAUGAUGCUGCAU - 21
Stem-loop(if miRNA) --                  A  AACUUA U      UUU A      AGCC     UU       A    UA
  GCGGCAUUAUCAAGAUUC CA      G AAAGGG   C UUGGAG    AAAGG  GUGGUUU GUGG  C
  |||||||||||||||||| ||      | ||||||   | ||||||    |||||  ||||||| ||||  C
  CGUCGUAGUAGUUCUAAG GU      C UUUCCU   G AACUUC    UUUCC  CACUAAA CACC  C
UA                  G  -AUAAA -      UUU A      --AU     UC       A    UC
Stem-loop sequence GCGGCAUUAUCAAGAUUCACAAACUUAGUAAAGGGUUUCAUUGGAGAGCCAAAGGUUGUGGUUUAGUGGUACCCCUCCACAAAAUCACCUCCUUUUACUUCAAAGUUUUCCUUUCAAAUAUGGGAAUCUUGAUGAUGCUGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017763509.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  =|||||||||||||=||||||
targets:1696   GUGCAGCAUCAUCAGGAUUCC   1716

1.5 PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108463584), mRNA floral homeotic protein APETALA 2-like(LOC108463584) coding protein psRNATarget
XM_017779172.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1774   CUGCAGCAUCAUCAGGAUUCC   1794

1.5 PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108476820), transcript variant X5, mRNA floral homeotic protein APETALA 2-like(LOC108476820) coding protein psRNATarget
XM_017779171.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1777   CUGCAGCAUCAUCAGGAUUCC   1797

1.5 PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108476820), transcript variant X4, mRNA floral homeotic protein APETALA 2-like(LOC108476820) coding protein psRNATarget
XM_017779169.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1783   CUGCAGCAUCAUCAGGAUUCC   1803

1.5 PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108476820), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC108476820) coding protein psRNATarget
XM_017779170.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1783   CUGCAGCAUCAUCAGGAUUCC   1803

1.5 PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108476820), transcript variant X3, mRNA floral homeotic protein APETALA 2-like(LOC108476820) coding protein psRNATarget
XM_017779168.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1785   CUGCAGCAUCAUCAGGAUUCC   1805

1.5 PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108476820), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC108476820) coding protein psRNATarget
XM_017772026.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1607   CUGCAGCAUCAUCAGGAUUCC   1627

1.5 PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108470648), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC108470648) coding protein psRNATarget
XM_017772027.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=||||||
targets:1661   CUGCAGCAUCAUCAGGAUUCC   1681

1.5 PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108470648), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC108470648) coding protein psRNATarget
XM_017791471.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  =*||||||||||||=||||||
targets:1774   GAGCAGCAUCAUCAGGAUUCC   1794

1.5 PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108487196), transcript variant X2, mRNA floral homeotic protein APETALA 2-like(LOC108487196) coding protein psRNATarget
XM_017791470.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  =*||||||||||||=||||||
targets:1783   GAGCAGCAUCAUCAGGAUUCC   1803

1.5 PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108487196), transcript variant X1, mRNA floral homeotic protein APETALA 2-like(LOC108487196) coding protein psRNATarget
XM_017761102.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1494   AUGCAGCAUCAUCAGGAUUCU   1514

2.5 PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108461300), transcript variant X2, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC108461300) coding protein psRNATarget
XM_017761101.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1501   AUGCAGCAUCAUCAGGAUUCU   1521

2.5 PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108461300), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC108461300) coding protein psRNATarget
XM_017761103.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  ||||||||||||||=|||||=
targets:1547   AUGCAGCAUCAUCAGGAUUCU   1567

2.5 PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108461300), transcript variant X3, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC108461300) coding protein psRNATarget
XM_017765194.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  =|||||||||||||=|||||=
targets:1561   GUGCAGCAUCAUCAGGAUUCU   1581

2.5 PREDICTED: Gossypium arboreum floral homeotic protein APETALA 2-like (LOC108464908), mRNA floral homeotic protein APETALA 2-like(LOC108464908) coding protein psRNATarget
XM_017748513.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1630   CUGCAGCAUCAUCAGGAUUCU   1650

2.5 PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108450753), transcript variant X3, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC108450753) coding protein psRNATarget
XM_017748512.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1696   CUGCAGCAUCAUCAGGAUUCU   1716

2.5 PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108450753), transcript variant X2, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC108450753) coding protein psRNATarget
XM_017748511.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1741   CUGCAGCAUCAUCAGGAUUCU   1761

2.5 PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108450753), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC108450753) coding protein psRNATarget
XM_017783489.1
ncRNA:21   UACGUCGUAGUAGUUCUAAGG   1
  *|||||||||||||=|||||=
targets:1639   CUGCAGCAUCAUCAGGAUUCU   1659

2.5 PREDICTED: Gossypium arboreum ethylene-responsive transcription factor RAP2-7-like (LOC108480474), transcript variant X1, mRNA ethylene-responsive transcription factor RAP2-7-like(LOC108480474) coding protein psRNATarget
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