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BaseInfo

ncRNA ID novel_gar_miR160
Species Gossypium arboreum
Class miRNA
Genome position Chr7:114961219-114961294 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587;SRR1029586
Length 24
Mature sequence(if miRNA) 53 - AGUUUUUAAUAGUAGAAAUGGAUG - 76
Stem-loop(if miRNA) --       G   A            -   ---A  ACAG
  UCUAUUU UAC AUUAAAAACUGG CAU    UG    A
  ||||||| ||| |||||||||||| |||    ||
  AGGUAAA AUG UAAUUUUUGACC GUA    AC    A
GU       G   A            A   ACAG  CAAU
Stem-loop sequence UCUAUUUGUACAAUUAAAAACUGGCAUAUGACAGAAUAACCAGACAAUGACCAGUUUUUAAUAGUAGAAAUGGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017760336.1
ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1
  ||||=|||||||||||||||||=|
targets:2190   CAUCUAUUUCUACUAUUAAAAAUU   2213

1.5 PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X1, mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC108460726) coding protein psRNATarget
XM_017760338.1
ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1
  ||||=|||||||||||||||||=|
targets:2286   CAUCUAUUUCUACUAUUAAAAAUU   2309

1.5 PREDICTED: Gossypium arboreum protein NRT1/ PTR FAMILY 8.3-like (LOC108460726), transcript variant X2, mRNA protein NRT1/ PTR FAMILY 8.3-like(LOC108460726) coding protein psRNATarget
XM_017757759.1
ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1
  =||=|||||||||||||||||=||
targets:1488   UAUUCAUUUCUACUAUUAAAAGCU   1511

1.5 PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X2, mRNA uncharacterized LOC108458388(LOC108458388) coding protein psRNATarget
XM_017757758.1
ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1
  =||=|||||||||||||||||=||
targets:1548   UAUUCAUUUCUACUAUUAAAAGCU   1571

1.5 PREDICTED: Gossypium arboreum uncharacterized LOC108458388 (LOC108458388), transcript variant X1, mRNA uncharacterized LOC108458388(LOC108458388) coding protein psRNATarget
XM_017759173.1
ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1
  ||||*|||||||||=|||||||||
targets:2529   CAUCAAUUUCUACUGUUAAAAACU   2552

1.5 PREDICTED: Gossypium arboreum uncharacterized LOC108459768 (LOC108459768), mRNA uncharacterized LOC108459768(LOC108459768) coding protein psRNATarget
XM_017787028.1
ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1
  =||==|||||||||||||||||=|
targets:4362   UAUUUAUUUCUACUAUUAAAAAUU   4385

1.5 PREDICTED: Gossypium arboreum RNA polymerase II C-terminal domain phosphatase-like 1 (LOC108483565), transcript variant X1, mRNA RNA polymerase II C-terminal domain phosphatase-like 1(LOC108483565) coding protein psRNATarget
XM_017786575.1
ncRNA:24   GUAGGUAAAGAUGAUAAUUUUUGA   1
  =||==||||=||=|||||||||||
targets:3327   UAUUUAUUUUUAUUAUUAAAAACU   3350

2.5 PREDICTED: Gossypium arboreum oxysterol-binding protein-related protein 2A (LOC108483282), transcript variant X2, mRNA oxysterol-binding protein-related protein 2A(LOC108483282) coding protein psRNATarget