ncRNA ID | novel_gar_miR159 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr7:114695946-114696099 [+] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029587 |
Length | 21 |
Mature sequence(if miRNA) | 1 - CCGCUCACAGAAAAGUCUGCG - 21 |
Stem-loop(if miRNA) |
--CC              C       C  -----G   ---C    A         -----     UU  AA  --       U     GCUCACAGAAAAGU UGCGAAG GU      GUU    GUGC UUUUGAGGA     AUAGG  CA  UC  CCACCAG U     |||||||||||||| ||||||| ||      |||    |||| |||||||||     |||||  ||  ||  ||||||| U     CGAGUGUCUUUUCA ACGUUUC CA      CAG    UACG GAAACUCCU     UAUCC  GU  AG  GGUGGUU C GAGA              A       A  GAUUUA   UAUA    G         GUUCC     UC  GG  UC       C |
Stem-loop sequence | CCGCUCACAGAAAAGUCUGCGAAGCGUGGUUCGUGCAUUUUGAGGAAUAGGUUCAAAUCCCACCAGUUUCCUUGGUGGCUGAGGUGCUCCUAUCCUUGUCCUCAAAGGGCAUAUAUGACAUUUAGACACUUUGCAAACUUUUCUGUGAGCAGAG |