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BaseInfo

ncRNA ID ath-miRf10956-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 25
Mature sequence(if miRNA) NA - CACUCGACCUCGGGGUCGAGUGGUG - NA
Stem-loop(if miRNA)    -     -          G           UGU   GAAG G UG  G  ----CU          A
AUG AAGAC ACUCGACCUC GGGUCGAGUGG   UGU    U G  AU UC      CUACUCGACC G
||| ||||| |||||||||| |||||||||||   |||    | |  || ||      ||||||||||
UAC UUUUG UGAGCUGGGG CCCAGCUCAUC   GCG    A U  UG AG      GGUGAGCUGG G
   G     G          G           --U   ---A G GU  G  UCGUCU          G
Stem-loop sequence AUGAAGACACUCGACCUCGGGGUCGAGUGGUGUUGUGAAGUGGUGAUGUCCUCUACUCGACCAGGGGGUCGAGUGGUCUGCUGAGGUUGUGAAGCGUCUACUCGACCCGGGGGUCGAGUGGUUUUGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY227642.1
ncRNA:25   GUGGUGAGCUGGGGCUCCAGCUCAC   1
  |||||||||||||||||||||||||
targets:852   CACCACUCGACCCCGAGGUCGAGUG   876

0.0 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183042.1
ncRNA:25   GUGGUGAGCUGGGGCUCCAGCUCAC   1
  ||=||||||||||||||||||||||
targets:1615   CAUCACUCGACCCCGAGGUCGAGUG   1639

0.0 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:25   GUGGUGAGCUGGGGCUCCAGCUCAC   1
  ||||||||||||*||||||||||||
targets:1148   CACCACUCGACCACGAGGUCGAGUG   1172

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
NM_103391.1
ncRNA:25   GUGGUGAGCUGGGGCUCCAGCUCAC   1
  *||||||||||||||*|||||||||
targets:1207   AACCACUCGACCCCGUGGUCGAGUG   1231

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
BT015478.1
ncRNA:25   GUGGU--GAGCUGGGGCUCCAGCUCAC   1
  |||||--|||||||||*||||||||||
targets:132   CACCAUACUCGACCCCCAGGUCGAGUG   158

1.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:25   GUGGU--GAGCUGGGGCUCCAGCUCAC   1
  |||||--|||||||||*||||||||||
targets:132   CACCAUACUCGACCCCCAGGUCGAGUG   158

1.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
EF183005.1
ncRNA:25   GUGGUGAGCUGGGGCUCCAGCUCAC   1
  *=*|||||||||=||||||||||||
targets:1862   AGGCACUCGACCUCGAGGUCGAGUG   1886

1.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
AY227642.1
ncRNA:25   GUGGUGAGCUGGGGCUCCAGCUCAC   1
  *||||||||||||*||||||||||*
targets:761   AACCACUCGACCCAGAGGUCGAGUA   785

2.5 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183042.1
ncRNA:25   GUGGUGAGCUGGGGCUCCAGCUCAC   1
  *|||||||||||*|||||||||||*
targets:1524   AACCACUCGACCACGAGGUCGAGUA   1548

2.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:25   GUGGUGAGCUGGGGCUCCAGCUCAC   1
  *|||||||||||||*|||||||||*
targets:1102   GACCACUCGACCCCCAGGUCGAGUA   1126

2.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
NM_103391.1
ncRNA:25   GUGGUGAGCUGGGGCUCCAGCUCAC   1
  *|*|||||||||||||||||||*|*
targets:1057   AAGCACUCGACCCCGAGGUCGACUA   1081

2.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
AY231407.1
ncRNA:25   GUGGUGAGCUGGGGCUCCAGCUCAC   1
  *||||||||||||||*||||||||*
targets:487   GACCACUCGACCCCGUGGUCGAGUA   511

2.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
BT025674.1
ncRNA:25   GUGG-UGAGCUGGGGCUCCAGCUCAC   1
  ||=|-||||||||||*|||||||||*
targets:184   CAUCUACUCGACCCCCAGGUCGAGUA   209

2.5 Arabidopsis thaliana NA coding protein psRNATarget
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