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BaseInfo

ncRNA ID novel_gar_miR134
Species Gossypium arboreum
Class miRNA
Genome position Chr6:3495256-3495338 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 22
Mature sequence(if miRNA) 1 - CGGCUGUCUGUAUAUGGUCGAA - 22
Stem-loop(if miRNA) --U     C  A     G    --UG  AUGGAGAAUAGAUUU
   GAUUA UA AUAGA AGCU    UC               C
   ||||| || ||||| ||||    ||
   CUGGU AU UGUCU UCGG    AC               U
AAG     -  A     G    CGUA  AGGAGGUGAAGUAGU
Stem-loop sequence UGAUUACUAAAUAGAGAGCUUGUCAUGGAGAAUAGAUUUCUUGAUGAAGUGGAGGACAAUGCGGCUGUCUGUAUAUGGUCGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017794441.1
ncRNA:22   AAGCUGGUAUAUGUCUGUCGGC   1
  ||=|=*=|||||||||||||||
targets:921   UUUGGGUAUAUACAGACAGCCG   942

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108489730 (LOC108489730), mRNA uncharacterized LOC108489730(LOC108489730) coding protein psRNATarget