Search result

BaseInfo

ncRNA ID novel_gar_miR105
Species Gossypium arboreum
Class miRNA
Genome position Chr6:94837981-94838093 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 24
Mature sequence(if miRNA) 90 - ACUUAAUGGGCUUUUGAAUUGGGU - 113
Stem-loop(if miRNA) --      - GG           G G UU   A     G UU  UA  GG     G U
  ACUUAA U  GCUUUUGAAUU G U  AAU UUUGG U  UG  AU  GUUUG G A
  |||||| |  ||||||||||| | |  ||| ||||| |  ||  ||  ||||| |
  UGGGUU G  UGGAGAUUUGG U A  UUG GAAUU G  AC  UG  UAAAU U G
UU      G UU           G G UU   G     G GU  --  GG     G A
Stem-loop sequence ACUUAAUGGGCUUUUGAAUUGGGUUUAAUAUUUGGGUUUUGUAAUGGGUUUGGGUAGAUGUAAAUGGGUCAUGGGUUAAGGGUUUUAGUGGGUUUAGAGGUUUGGUUGGGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017753411.1
ncRNA:24   UGGGUUAAGUUUUCGGGUAAUUCA   1
  |||||||||||||||||||||||*
targets:2054   ACCCAAUUCAAAAGCCCAUUAAGC   2077

1.0 PREDICTED: Gossypium arboreum hydroxyphenylpyruvate reductase-like (LOC108454826), mRNA hydroxyphenylpyruvate reductase-like(LOC108454826) coding protein psRNATarget