ncRNA ID | novel_gar_miR105 |
Species | Gossypium arboreum |
Class | miRNA |
Genome position | Chr6:94837981-94838093 [-] |
Reference genome | Gossypium_arboreum_v1.0 |
Source | SRR1029587 |
Length | 24 |
Mature sequence(if miRNA) | 90 - ACUUAAUGGGCUUUUGAAUUGGGU - 113 |
Stem-loop(if miRNA) |
--      - GG           G G UU   A     G UU  UA  GG     G U   ACUUAA U  GCUUUUGAAUU G U  AAU UUUGG U  UG  AU  GUUUG G A   |||||| |  ||||||||||| | |  ||| ||||| |  ||  ||  ||||| |   UGGGUU G  UGGAGAUUUGG U A  UUG GAAUU G  AC  UG  UAAAU U G UU      G UU           G G UU   G     G GU  --  GG     G A |
Stem-loop sequence | ACUUAAUGGGCUUUUGAAUUGGGUUUAAUAUUUGGGUUUUGUAAUGGGUUUGGGUAGAUGUAAAUGGGUCAUGGGUUAAGGGUUUUAGUGGGUUUAGAGGUUUGGUUGGGUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_017753411.1 |
|
1.0 | PREDICTED: Gossypium arboreum hydroxyphenylpyruvate reductase-like (LOC108454826), mRNA | hydroxyphenylpyruvate reductase-like(LOC108454826) | coding protein | psRNATarget |