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BaseInfo

ncRNA ID novel_gar_miR98
Species Gossypium arboreum
Class miRNA
Genome position Chr6:115581230-115581325 [-]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587;SRR1029588;SRR1029586
Length 24
Mature sequence(if miRNA) 73 - AAAGGAAUAUUCGAUUGCUUUGAA - 96
Stem-loop(if miRNA) --     -        AU  C     A   ACAA A     CAA   AGC
  AAAGG AAUAUUCG  UG UUUGA CAA    G AAUCA   CCC   A
  ||||| ||||||||  || ||||| |||    | |||||   |||   C
  UUUCC UUAUGAGC  AC AAACU GUU    C UUAGU   GGG   G
UG     G        -C  -     -   AAGC C     -AC   AUA
Stem-loop sequence AAAGGAAUAUUCGAUUGCUUUGAACAAACAAGAAAUCACAACCCAGCACGAUAGGGCAUGAUUCCCGAAUUGUCAAACACCGAGUAUUGCCUUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017749107.1
ncRNA:24   AAGUUUCGUUAGCUUAUAAGGAAA   1
  **|=||||||||||||=||||||*
targets:1780   GACGAAGCAAUCGAAUGUUCCUUA   1803

2.5 PREDICTED: Gossypium arboreum uncharacterized LOC108451414 (LOC108451414), mRNA uncharacterized LOC108451414(LOC108451414) coding protein psRNATarget