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BaseInfo

ncRNA ID	novel_gar_miR96
Species	Gossypium arboreum
Class	miRNA
Genome position	Chr6:120168525-120168609 [+]
Reference genome	Gossypium_arboreum_v1.0
Source	SRR1029587;SRR1029588;SRR3180719;SRR3180721;SRR1029586
Length	21
Mature sequence(if miRNA)	1 - UUGACAGAAGAUAGAGAGCAC - 21
Stem-loop(if miRNA)	--U         -              U  -   U U     AU    UGACAGAAG AUAGAGAGCACAGA GA UGG G UGCAU  G    ||||||||| |||||||||||||| || ||| | |||||    ACUGUCUUC UAUCUCUCGUGUUU CU ACC C ACGUA  U ACU         G              C  C   - U     CG
Stem-loop sequence	UUGACAGAAGAUAGAGAGCACAGAUGAUGGUGUUGCAUAUGUGCAUGCAUCCCACUCCUUUGUGCUCUCUAUGCUUCUGUCAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_017775135.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:871   GUGCUCUCUCUCUUCUGUCAA   891 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 17 (LOC108473521), mRNA	squamosa promoter-binding-like protein 17(LOC108473521)	coding protein	psRNATarget
XM_017783987.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:924   GUGCUCUCUCUCUUCUGUCAA   944 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 9 (LOC108480862), mRNA	squamosa promoter-binding-like protein 9(LOC108480862)	coding protein	psRNATarget
XM_017765900.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:915   GUGCUCUCUCUCUUCUGUCAA   935 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 9 (LOC108465551), mRNA	squamosa promoter-binding-like protein 9(LOC108465551)	coding protein	psRNATarget
XM_017756867.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1501   GUGCUCUCUCUCUUCUGUCAA   1521 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X5, mRNA	squamosa promoter-binding-like protein 2(LOC108457744)	coding protein	psRNATarget
XM_017778559.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1397   GUGCUCUCUCUCUUCUGUCAA   1417 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108476362), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC108476362)	coding protein	psRNATarget
XM_017760108.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1455   GUGCUCUCUCUCUUCUGUCAA   1475 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X5, mRNA	squamosa promoter-binding-like protein 2(LOC108460571)	coding protein	psRNATarget
XM_017760107.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1498   GUGCUCUCUCUCUUCUGUCAA   1518 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X4, mRNA	squamosa promoter-binding-like protein 2(LOC108460571)	coding protein	psRNATarget
XM_017760109.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1621   GUGCUCUCUCUCUUCUGUCAA   1641 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X6, mRNA	squamosa promoter-binding-like protein 2(LOC108460571)	coding protein	psRNATarget
XM_017756866.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1915   GUGCUCUCUCUCUUCUGUCAA   1935 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X4, mRNA	squamosa promoter-binding-like protein 2(LOC108457744)	coding protein	psRNATarget
XM_017760106.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1768   GUGCUCUCUCUCUUCUGUCAA   1788 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC108460571)	coding protein	psRNATarget
XM_017760103.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1890   GUGCUCUCUCUCUUCUGUCAA   1910 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC108460571)	coding protein	psRNATarget
XM_017756864.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:2449   GUGCUCUCUCUCUUCUGUCAA   2469 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC108457744)	coding protein	psRNATarget
XM_017760104.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:2222   GUGCUCUCUCUCUUCUGUCAA   2242 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108460571), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC108460571)	coding protein	psRNATarget
XM_017756863.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:2506   GUGCUCUCUCUCUUCUGUCAA   2526 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC108457744)	coding protein	psRNATarget
XM_017756865.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:2608   GUGCUCUCUCUCUUCUGUCAA   2628 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC108457744)	coding protein	psRNATarget
XM_017756868.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:2618   GUGCUCUCUCUCUUCUGUCAA   2638 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108457744), transcript variant X6, mRNA	squamosa promoter-binding-like protein 2(LOC108457744)	coding protein	psRNATarget
XM_017778560.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:2804   GUGCUCUCUCUCUUCUGUCAA   2824 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 2 (LOC108476362), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC108476362)	coding protein	psRNATarget
XM_017793014.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   *||||||||*||||||||||| targets:675   AUGCUCUCUCUCUUCUGUCAA   695 Target Full Sequence	1.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 3 (LOC108488727), mRNA	squamosa promoter-binding-like protein 3(LOC108488727)	coding protein	psRNATarget
XM_017785312.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||= targets:891   GUGCUCUCUCUCUUCUGUCAG   911 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108482194), mRNA	squamosa promoter-binding-like protein 6(LOC108482194)	coding protein	psRNATarget
XM_017761788.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||= targets:1318   GUGCUCUCUCUCUUCUGUCAG   1338 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108461834), mRNA	squamosa promoter-binding-like protein 6(LOC108461834)	coding protein	psRNATarget
XM_017750004.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:683   GUGCUCUCUCUCUUCUGUCAU   703 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 7 (LOC108452234), mRNA	squamosa promoter-binding-like protein 7(LOC108452234)	coding protein	psRNATarget
XM_017781546.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:932   GUGCUCUCUCUCUUCUGUCAU   952 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108479128), transcript variant X3, mRNA	squamosa promoter-binding-like protein 16(LOC108479128)	coding protein	psRNATarget
XM_017768226.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1014   GUGCUCUCUCUCUUCUGUCAU   1034 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X5, mRNA	squamosa promoter-binding-like protein 16(LOC108467559)	coding protein	psRNATarget
XM_017768227.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1017   GUGCUCUCUCUCUUCUGUCAU   1037 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X6, mRNA	squamosa promoter-binding-like protein 16(LOC108467559)	coding protein	psRNATarget
XM_017769069.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1114   GUGCUCUCUCUCUUCUGUCAU   1134 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108468186), transcript variant X3, mRNA	squamosa promoter-binding-like protein 16(LOC108468186)	coding protein	psRNATarget
XM_017768224.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1052   GUGCUCUCUCUCUUCUGUCAU   1072 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X3, mRNA	squamosa promoter-binding-like protein 16(LOC108467559)	coding protein	psRNATarget
XM_017758701.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:912   GUGCUCUCUCUCUUCUGUCAU   932 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 7 (LOC108459343), transcript variant X2, mRNA	squamosa promoter-binding-like protein 7(LOC108459343)	coding protein	psRNATarget
XM_017781544.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1106   GUGCUCUCUCUCUUCUGUCAU   1126 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108479128), transcript variant X1, mRNA	squamosa promoter-binding-like protein 16(LOC108479128)	coding protein	psRNATarget
XM_017768223.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1111   GUGCUCUCUCUCUUCUGUCAU   1131 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X2, mRNA	squamosa promoter-binding-like protein 16(LOC108467559)	coding protein	psRNATarget
XM_017758700.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:957   GUGCUCUCUCUCUUCUGUCAU   977 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 7 (LOC108459343), transcript variant X1, mRNA	squamosa promoter-binding-like protein 7(LOC108459343)	coding protein	psRNATarget
XM_017769068.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1204   GUGCUCUCUCUCUUCUGUCAU   1224 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108468186), transcript variant X2, mRNA	squamosa promoter-binding-like protein 16(LOC108468186)	coding protein	psRNATarget
XM_017769067.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1213   GUGCUCUCUCUCUUCUGUCAU   1233 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108468186), transcript variant X1, mRNA	squamosa promoter-binding-like protein 16(LOC108468186)	coding protein	psRNATarget
XM_017779909.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1135   GUGCUCUCUCUCUUCUGUCAU   1155 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 13A (LOC108477384), mRNA	squamosa promoter-binding-like protein 13A(LOC108477384)	coding protein	psRNATarget
XM_017781545.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1221   GUGCUCUCUCUCUUCUGUCAU   1241 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108479128), transcript variant X2, mRNA	squamosa promoter-binding-like protein 16(LOC108479128)	coding protein	psRNATarget
XM_017768222.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1877   GUGCUCUCUCUCUUCUGUCAU   1897 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X1, mRNA	squamosa promoter-binding-like protein 16(LOC108467559)	coding protein	psRNATarget
XM_017768225.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1917   GUGCUCUCUCUCUUCUGUCAU   1937 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 16 (LOC108467559), transcript variant X4, mRNA	squamosa promoter-binding-like protein 16(LOC108467559)	coding protein	psRNATarget
XM_017783067.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1749   GUGCUCUCUCUCUUCUGUCAU   1769 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108480171), transcript variant X1, mRNA	squamosa promoter-binding-like protein 6(LOC108480171)	coding protein	psRNATarget
XM_017783069.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:1928   GUGCUCUCUCUCUUCUGUCAU   1948 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108480171), transcript variant X3, mRNA	squamosa promoter-binding-like protein 6(LOC108480171)	coding protein	psRNATarget
XM_017783068.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||* targets:2033   GUGCUCUCUCUCUUCUGUCAU   2053 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 6 (LOC108480171), transcript variant X2, mRNA	squamosa promoter-binding-like protein 6(LOC108480171)	coding protein	psRNATarget
XM_017792853.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   *||||||||*||||||||||* targets:822   AUGCUCUCUCUCUUCUGUCAU   842 Target Full Sequence	2.5	PREDICTED: Gossypium arboreum squamosa promoter-binding-like protein 13A (LOC108488561), mRNA	squamosa promoter-binding-like protein 13A(LOC108488561)	coding protein	psRNATarget