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BaseInfo

ncRNA ID novel_gar_miR90
Species Gossypium arboreum
Class miRNA
Genome position Chr6:115458500-115458602 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587
Length 21
Mature sequence(if miRNA) 1 - UAGCCAAGGAUGACUUGCCUA - 21
Stem-loop(if miRNA) --         AU    U     AACC        ----    A        U  U
  UAGCCAAGG  GACU GCCUA    CAAACUAG    AGGA UGUUAUAU UA A
  |||||||||  |||| |||||    ||||||||    |||| |||||||| ||
  AUCGGUUUC  CUGA CGGAU    GUUUGGUC    UCCU AUAAUAUA AU U
CU         CU    -     ----        AUUU    A        C  A
Stem-loop sequence UAGCCAAGGAUGACUUGCCUAAACCCAAACUAGAGGAAUGUUAUAUUUAUAUAUACAUAUAAUAAUCCUUUUACUGGUUUGUAGGCAGUCUCCUUUGGCUAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_017755461.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  |||||||||||||||||||||
targets:1773   UAGGCAAGUCAUCCUUGGCUA   1793

0.0 PREDICTED: Gossypium arboreum ankyrin repeat and SAM domain-containing protein 6 (LOC108456791), mRNA ankyrin repeat and SAM domain-containing protein 6(LOC108456791) coding protein psRNATarget
XM_017771947.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  |*|||||*||||||||||||*
targets:845   UCGGCAACUCAUCCUUGGCUU   865

2.0 PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108470590), transcript variant X4, mRNA nuclear transcription factor Y subunit A-7-like(LOC108470590) coding protein psRNATarget
XM_017790883.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  |*|||||*||||||||||||*
targets:1081   UCGGCAACUCAUCCUUGGCUU   1101

2.0 PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-5-like (LOC108486690), transcript variant X2, mRNA nuclear transcription factor Y subunit A-5-like(LOC108486690) coding protein psRNATarget
XM_017790874.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  |*|||||*||||||||||||*
targets:1105   UCGGCAACUCAUCCUUGGCUU   1125

2.0 PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-5-like (LOC108486690), transcript variant X1, mRNA nuclear transcription factor Y subunit A-5-like(LOC108486690) coding protein psRNATarget
XM_017771945.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  |*|||||*||||||||||||*
targets:1233   UCGGCAACUCAUCCUUGGCUU   1253

2.0 PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108470590), transcript variant X2, mRNA nuclear transcription factor Y subunit A-7-like(LOC108470590) coding protein psRNATarget
XM_017771946.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  |*|||||*||||||||||||*
targets:1367   UCGGCAACUCAUCCUUGGCUU   1387

2.0 PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108470590), transcript variant X3, mRNA nuclear transcription factor Y subunit A-7-like(LOC108470590) coding protein psRNATarget
XM_017771944.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  |*|||||*||||||||||||*
targets:2832   UCGGCAACUCAUCCUUGGCUU   2852

2.0 PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108470590), transcript variant X1, mRNA nuclear transcription factor Y subunit A-7-like(LOC108470590) coding protein psRNATarget
XM_017761781.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  **|||||*||||||||||||*
targets:1134   CCGGCAACUCAUCCUUGGCUU   1154

2.0 PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108461829), transcript variant X2, mRNA nuclear transcription factor Y subunit A-7-like(LOC108461829) coding protein psRNATarget
XM_017761782.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  **|||||*||||||||||||*
targets:1136   CCGGCAACUCAUCCUUGGCUU   1156

2.0 PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108461829), transcript variant X3, mRNA nuclear transcription factor Y subunit A-7-like(LOC108461829) coding protein psRNATarget
XM_017761780.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  **|||||*||||||||||||*
targets:1139   CCGGCAACUCAUCCUUGGCUU   1159

2.0 PREDICTED: Gossypium arboreum nuclear transcription factor Y subunit A-7-like (LOC108461829), transcript variant X1, mRNA nuclear transcription factor Y subunit A-7-like(LOC108461829) coding protein psRNATarget
XM_017747542.1
ncRNA:21   AUCCGUUCAGUAGGAACCGAU   1
  *|*||*||||||||||||||=
targets:1007   CACGCUAGUCAUCCUUGGCUG   1027

3.0 PREDICTED: Gossypium arboreum uncharacterized LOC108450089 (LOC108450089), mRNA uncharacterized LOC108450089(LOC108450089) coding protein psRNATarget