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BaseInfo

ncRNA ID novel_gar_miR71
Species Gossypium arboreum
Class miRNA
Genome position Chr5:58872961-58873159 [+]
Reference genome Gossypium_arboreum_v1.0
Source SRR1029587;SRR1029588;SRR1029586
Length 24
Mature sequence(if miRNA) 1 - CAUACACAUGGACUGCUAUGUGGA - 24
Stem-loop(if miRNA) --       A    CU                A   A         AAU         -UU              -C   C      -U    ---U    ACU
  CAUACAC UGGA  GCUAUGUGGAUGACAU UCA CAUUUAAUU   UUUUUAAAA   UUAAAAAUUAAAAA  UAU UUUUUA  AAUU    UUAU   U
  ||||||| ||||  |||||||||||||||| ||| |||||||||   |||||||||   ||||||||||||||  ||| ||||||  ||||    ||||
  GUAUGUG ACCU  CGGUGUAUCUACUGUG AGU GUAAAUUAA   AAAAAUUUU   AAUUUUUAAUUUUU  AUA AAAAAU  UUAA    AAUA   U
UC       A    AU                G   A         ---         UUU              UU   U      UU    UUUU    AUU
Stem-loop sequence CAUACACAUGGACUGCUAUGUGGAUGACAUAUCAACAUUUAAUUAAUUUUUUAAAAUUUUAAAAAUUAAAAACUAUCUUUUUAUAAUUUUUAUACUUUUUAAUAAUUUUAAUUUUUAAAAAUAUAUUUUUUUAAUUUUUAAUUUUUUUAAAAAAAUUAAAUGAUGAGGUGUCAUCUAUGUGGCUAUCCAAGUGUAUGCU