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BaseInfo

ncRNA ID	ath-miRf10946-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - CACUCGACCUCGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)	-          GG          U   GU AAG GUAGAC ACUCGACCUC  GGUCGAGUGG GAG  G   U |||||| ||||||||||  |||||||||| |||  |   G CGUCUG UGAGCUGGGG  CCAGCUCAUC UUC  U   G       G          GA          -   UG GGU
Stem-loop sequence	GUAGACACUCGACCUCGGGGUCGAGUGGUGAGGUGAAGUGGUGGUGUCUUCUACUCGACCAGGGGGUCGAGUGGUCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY227642.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1   |||||||||||||||||||||||| targets:853   ACCACUCGACCCCGAGGUCGAGUG   876 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1   |=|||||||||||||||||||||| targets:1616   AUCACUCGACCCCGAGGUCGAGUG   1639 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1   |||||||||||*|||||||||||| targets:1149   ACCACUCGACCACGAGGUCGAGUG   1172 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1   ||||||||||||||*||||||||| targets:1208   ACCACUCGACCCCGUGGUCGAGUG   1231 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
EF183005.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1   =*|||||||||=|||||||||||| targets:1863   GGCACUCGACCUCGAGGUCGAGUG   1886 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:24   UGGU--GAGCUGGGGCUCCAGCUCAC   1   ||||--|||||||||*|||||||||| targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:24   UGGU--GAGCUGGGGCUCCAGCUCAC   1   ||||--|||||||||*|||||||||| targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY227642.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1   ||||||||||||*||||||||||* targets:762   ACCACUCGACCCAGAGGUCGAGUA   785 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1   |||||||||||*|||||||||||* targets:1525   ACCACUCGACCACGAGGUCGAGUA   1548 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1   |||||||||||||*|||||||||* targets:1103   ACCACUCGACCCCCAGGUCGAGUA   1126 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1   |*|||||||||||||||||||*|* targets:1058   AGCACUCGACCCCGAGGUCGACUA   1081 Target Full Sequence	2.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
AY231407.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1   ||||||||||||||*||||||||* targets:488   ACCACUCGACCCCGUGGUCGAGUA   511 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT025674.1	ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1   *|=||||||||||*|||||||||* targets:186   UCUACUCGACCCCCAGGUCGAGUA   209 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget